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Ndufa9
Gene Detail
Symbol

Name
ID
Ndufa9
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9
MGI:1913358
Synonyms
1010001N11Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 6
61.92 cM, cytoband F3
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr6:126821954-126849136 bp, - strand
From VEGA annotation of GRCm38

  27183 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:3666  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 2 zebrafish

HCOP human homology predictions: NDUFA9
Gene Tree: Ndufa9

Human
homologs
NDUFA9, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 4704
neXtProt AC: NX_Q16795

Human Synonyms: CC6, CI39k, CI-39k, NDUFS2L, SDR22E1

Human Chr (Location): 12p13.3; chr12:4649098-4687554 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human NDUFA9

Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(5) Targeted(1)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Ndufa9 interacts with 37 markers (Mir147, Mir190b, Mir291a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (15 annotations)
Process oxidation-reduction process, transport, ...
Component mitochondrial inner membrane, mitochondrial matrix, ...
Function NADH dehydrogenase activity, protein complex binding
External Resources: FuncBase
Expression
Literature Summary: (7 records)
Data Summary: Results (298)    Tissues (122)    Images (33)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 298
cDNA source data(201)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase ndufa9 ; ZFIN ndufa9a    NEW 
Molecular
reagents
All nucleic(202) cDNA(201) Primer pair(1)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000056335 (Evidence)
Ensembl Gene Model ENSMUSG00000000399 (Evidence)
Entrez Gene 66108 (Evidence)
UniGene 29939
DFCI TC1572388
DoTS DT.101165734, DT.496157
NIA Mouse Gene Index U027879
Consensus CDS Project CCDS20557.1
International Mouse Phenotyping Consortium Status Ndufa9
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000056335 VEGA Gene Model | MGI Sequence Detail 27183 C57BL/6J ±  kb
transcript OTTMUST00000139223 VEGA | MGI Sequence Detail 1212 Not Applicable 
polypeptide OTTMUSP00000073078 VEGA | MGI Sequence Detail 377 Not Applicable 

For the selected sequences
All sequences(22) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(165 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR016040 NAD(P)-binding domain
InterPro IPR008030 NmrA-like domain
Protein Ontology PR:000011080 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:206222 Peralta S, et al., Partial complex I deficiency due to the CNS conditional ablation of Ndufa5 results in a mild chronic encephalopathy but no increase in oxidative damage. Hum Mol Genet. 2014 Mar 15;23(6):1399-412
All references(42)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory