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Ndufa9
Gene Detail
Symbol

Name
ID
Ndufa9
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9
MGI:1913358
Synonyms
1010001N11Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 6
61.92 cM, cytoband F3
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr6:126821863-126849144 bp, - strand
From Ensembl annotation of GRCm38

  27282 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:3666  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 2 zebrafish

Gene Tree: Ndufa9

Human
homologs
Human Homolog NDUFA9, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9, 39kDa
NCBI Gene ID 4704
neXtProt AC  NX_Q16795
Human Synonyms  CC6, CI39k, CI-39k, NDUFS2L, SDR22E1
Human Chr (Location)  12p13.3; chr12:4649098-4687554 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human NDUFA9
Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(5) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Ndufa9 interacts with 37 markers (Mir147, Mir190b, Mir291a, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process oxidation-reduction process, transport
Component mitochondrial inner membrane, mitochondrial matrix, ...
Function NADH dehydrogenase activity, protein complex binding
External Resources: FuncBase
Expression
Literature Summary: (7 records)
Data Summary: Results (298)    Tissues (122)    Images (33)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 298
cDNA source data(201)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(202) cDNA(201) Primer pair(1)
Microarray probesets(3)
Other database
links
Ensembl Gene ModelENSMUSG00000000399 (Evidence)
Entrez Gene66108 (Evidence)
UniGene29939
DFCITC1572388
DoTSDT.101165734, DT.496157
NIA Mouse Gene IndexU027879
Consensus CDS ProjectCCDS20557.1
International Mouse Knockout Project StatusNdufa9
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000000399 Ensembl Gene Model | MGI Sequence Detail 27282 C57BL/6J ±  kb
transcript ENSMUST00000088194 Ensembl | MGI Sequence Detail 1322 Not Applicable 
polypeptide ENSMUSP00000085523 Ensembl | MGI Sequence Detail 377 Not Applicable 

For the selected sequences
All sequences(20) RefSeq(4) UniProt(1)
Polymorphisms
SNPs within 2kb(165 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR016040 NAD(P)-binding domain
InterPro IPR008030 NmrA-like
Protein Ontology PR:000011080 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:206222 Peralta S, et al., Partial complex I deficiency due to the CNS conditional ablation of Ndufa5 results in a mild chronic encephalopathy but no increase in oxidative damage. Hum Mol Genet. 2014 Mar 15;23(6):1399-412
All references(41)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory