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Cystm1 Gene Detail
Summary
  • Symbol
    Cystm1
  • Name
    cysteine-rich transmembrane module containing 1
  • Synonyms
    0610010O12Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913310
    NCBI Gene: 66060
  • Alliance
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:36348624-36393370 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 18, 19.46 cM, cytoband B3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    99 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913310
protein coding gene Chr18:36345619-36402980 (+)
129S1/SvImJ MGP_129S1SvImJ_G0024276
protein coding gene Chr18:34737196-34794893 (+)
A/J MGP_AJ_G0024242
protein coding gene Chr18:33519918-33578480 (+)
AKR/J MGP_AKRJ_G0024210
protein coding gene Chr18:34446704-34505136 (+)
BALB/cJ MGP_BALBcJ_G0024242
protein coding gene Chr18:33569311-33627092 (+)
C3H/HeJ MGP_C3HHeJ_G0024009
protein coding gene Chr18:34523795-34581787 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024683
protein coding gene Chr18:35953694-36013616 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022123
protein coding gene Chr18:33613250-33671116 (+)
CAST/EiJ MGP_CASTEiJ_G0023484
protein coding gene Chr18:34515452-34575731 (+)
CBA/J MGP_CBAJ_G0023977
protein coding gene Chr18:37031951-37094453 (+)
DBA/2J MGP_DBA2J_G0024109
protein coding gene Chr18:33143741-33202211 (+)
FVB/NJ MGP_FVBNJ_G0024076
protein coding gene Chr18:32843789-32901518 (+)
LP/J MGP_LPJ_G0024191
protein coding gene Chr18:34768586-34827819 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024104
protein coding gene Chr18:38235106-38296166 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024732
protein coding gene Chr18:34323006-34380409 (+)
PWK/PhJ MGP_PWKPhJ_G0023228
protein coding gene Chr18:33389190-33448182 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023035
protein coding gene Chr18:34576323-34634815 (+)
WSB/EiJ MGP_WSBEiJ_G0023547
protein coding gene Chr18:34245185-34304632 (+)



Homology
more
  • Human Ortholog
    CYSTM1, cysteine rich transmembrane module containing 1
  • Human Ortholog
    CYSTM1, cysteine rich transmembrane module containing 1
    Orthology source: HGNC
  • Synonyms
    C5orf32, ORF1-FL49
  • Links
    NCBI Gene ID: 84418
    neXtProt AC: NX_Q9H1C7
    UniProt: Q9H1C7

  • Chr Location
    5q31.3; chr5:140175068-140243789 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotypes from 1 allele in 1 genetic background
    7 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 66060 NCBI Gene Model | MGI Sequence Detail 44747 C57BL/6J ±  kb
transcript NM_001368637 RefSeq | MGI Sequence Detail 754 C57BL/6  
polypeptide Q8K353 UniProt | EBI | MGI Sequence Detail 104 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
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  • All nucleic 91
    cDNA 91

    Microarray probesets 6
References
more
  • Summaries
    All 28
    Gene Ontology 1
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/18/2019
MGI 6.14
The Jackson Laboratory