0610009D07Rik
Gene Detail

Symbol Name ID

0610009D07Rik RIKEN cDNA 0610009D07 gene MGI:1913305

Synonyms

6030419K15Rik

Feature Type

protein coding gene

Genetic Map

Chromosome 12

2.09 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr12:4817608-4827658 bp, + strand From Ensembl annotation of GRCm38   10051 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:9360  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: 0610009D07Rik

Human homologs

Human Homolog		SF3B14, splicing factor 3B, 14 kDa subunit
NCBI Gene ID		51639
neXtProt AC		NX_Q9Y3B4
Human Synonyms		HSPC175, Ht006, P14, SAP14, SF3B14a
Human Chr (Location)		2pter-p25.1; chr2:24290454-24299314 (-)  GRCh37.p10

Alleles and phenotypes

All alleles(9) : Targeted(2) Gene trapped(7)

Gene Ontology (GO) classifications

All GO classifications: (7 annotations)

Process	mRNA processing, RNA splicing
Component	nucleus, U12-type spliceosomal complex
Function	nucleic acid binding, nucleotide binding, ...

External Resources: FuncBase

Expression

Literature Summary: (1 records)
Data Summary: Results (22)    Tissues (22)    Images (3)
Theiler Stages: 21, 28

Assay Type	Results
RNA in situ	20
RT-PCR	2

cDNA source data(130)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(131) cDNA(130) Primer pair(1)
Microarray probesets(5)

Other database links

Ensembl Gene Model	ENSMUSG00000037361 (Evidence)
Entrez Gene	66055 (Evidence)
UniGene	102627
DFCI	TC1583896, TC1602530, TC1604284, TC1616116, TC1774441
DoTS	DT.101719911, DT.496626, DT.87033566, DT.94347972
NIA Mouse Gene Index	U013724
Consensus CDS Project	CCDS25791.1
International Mouse Knockout Project Status	0610009D07Rik

Sequences

Length	Strain/Species
genomic	ENSMUSG00000037361	Ensembl Gene Model | MGI Sequence Detail	10051	C57BL/6J
transcript	ENSMUST00000046207	Ensembl | MGI Sequence Detail	1115	Not Applicable
polypeptide	ENSMUSP00000043662	Ensembl | MGI Sequence Detail	125	Not Applicable

All sequences(27) RefSeq(2) UniProt(1)

Polymorphisms

SNPs(29 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR012677	Nucleotide-binding, alpha-beta plait
InterPro	IPR000504	RNA recognition motif domain
Protein Ontology	PR:000014735	pre-mRNA branch site protein p14

References

(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(33)

Other accession IDs

MGI:1924972, MGI:2142728