About   Help   FAQ
Sf3b6
Gene Detail
 Symbol
Name
ID
Sf3b6
splicing factor 3B, subunit 6
MGI:1913305
Synonyms 0610009D07Rik, 6030419K15Rik, Sf3b14
Feature Type protein coding gene
Genetic Map
Chromosome 12
2.09 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr12:4817608-4827658 bp, + strand
From Ensembl annotation of GRCm38

  10051 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9360  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Sf3b6

Human
homologs
Human Homolog SF3B6, splicing factor 3b, subunit 6, 14kDa
NCBI Gene ID 51639
neXtProt AC  NX_Q9Y3B4
Human Synonyms  HSPC175, Ht006, P14, SAP14, SAP14a, SF3B14, SF3B14a
Human Chr (Location)  2p23; chr2:24067584-24076444 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(9) : Gene trapped(7) Targeted(2)
Interactions
Sf3b6 interacts with 65 markers (Mir31, Mir34b, Mir34c, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process mRNA processing, RNA splicing
Component nucleus, U12-type spliceosomal complex
Function nucleic acid binding, nucleotide binding, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (22)    Tissues (22)    Images (3)
Theiler Stages: 21, 28
Assay TypeResults
RNA in situ 20
RT-PCR 2
cDNA source data(130)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(131) cDNA(130) Primer pair(1)
Microarray probesets(5)
Other database
links
Ensembl Gene ModelENSMUSG00000037361 (Evidence)
Entrez Gene66055 (Evidence)
UniGene102627
DFCITC1583896, TC1602530, TC1604284, TC1616116, TC1774441
DoTSDT.101719911, DT.496626, DT.87033566, DT.94347972
NIA Mouse Gene IndexU013724
Consensus CDS ProjectCCDS25791.1
International Mouse Knockout Project StatusSf3b6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000037361 Ensembl Gene Model | MGI Sequence Detail 10051 C57BL/6J ±  kb
transcript ENSMUST00000046207 Ensembl | MGI Sequence Detail 1115 Not Applicable 
polypeptide ENSMUSP00000043662 Ensembl | MGI Sequence Detail 125 Not Applicable 

For the selected sequences
All sequences(27) RefSeq(2) UniProt(1)
Polymorphisms SNPs within 2kb(52 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR012677 Nucleotide-binding, alpha-beta plait
InterPro IPR000504 RNA recognition motif domain
Protein Ontology PR:000014735 pre-mRNA branch site protein p14
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(33)
Other
accession IDs
MGI:1924972, MGI:2142728

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
07/23/2014
MGI 5.19
The Jackson Laboratory