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Sf3b6 Gene Detail
Summary
  • Symbol
    Sf3b6
  • Name
    splicing factor 3B, subunit 6
  • Synonyms
    0610009D07Rik, 6030419K15Rik, Sf3b14
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913305
    NCBI Gene: 66055
  • Gene Overview
    MyGene.info: SF3B6
Location & Maps
more
  • Sequence Map
    Chr12:4817608-4827658 bp, + strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      10051 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 2.09 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    SF3B6, splicing factor 3b subunit 6
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SF3B6, splicing factor 3b subunit 6
    Orthology source: HomoloGene
  • Synonyms
    CGI-110, HSPC175, Ht006, P14, SAP14, SAP14a, SF3B14, SF3B14a
  • Links
    NCBI Gene ID: 51639
    neXtProt AC: NX_Q9Y3B4

  • Chr Location
    2p23; chr2:24067584-24076444 (-)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 9360
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed
  • HCOP
    human homology predictions: SF3B6
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    9
  • Gene trapped
    7
  • Targeted
    2
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000037361 Ensembl Gene Model | MGI Sequence Detail 10051 C57BL/6J ±  kb
transcript ENSMUST00000046207 Ensembl | MGI Sequence Detail 1115 Not Applicable  
polypeptide ENSMUSP00000043662 Ensembl | MGI Sequence Detail 125 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    52 from dbSNP Build 142
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000014735 splicing factor 3B subunit 6
  • InterPro Domains
    IPR012677 Nucleotide-binding alpha-beta plait domain
    IPR000504 RNA recognition motif domain
Molecular
Reagents
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  • All nucleic 132
    cDNA 130
    Primer pair 2

    Microarray probesets 5
Other
Accession IDs
less
MGI:1924972, MGI:2142728
References
more
  • Summaries
    All 31
    Developmental Gene Expression 2
    Gene Ontology 5
    Phenotypes 4
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:215371 Maserati M, et al., Identification of four genes required for mammalian blastocyst formation. Zygote. 2014 Aug;22(3):331-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
08/23/2016
MGI 6.05
The Jackson Laboratory