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Atp5d Gene Detail
Summary
  • Symbol
    Atp5d
  • Name
    ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit
  • Synonyms
    0610008F14Rik, 1500000I11Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913293
    NCBI Gene: 66043
  • Gene Overview
    MyGene.info: ATP5F1D
  • Alliance
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:80138768-80145818 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 39.72 cM, cytoband C1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    7 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913293
protein coding gene Chr10:80138632-80145818 (.)
129S1/SvImJ MGP_129S1SvImJ_G0017484
protein coding gene Chr10:80723728-80730960 (+)
A/J MGP_AJ_G0017462
protein coding gene Chr10:77900285-77907469 (+)
AKR/J MGP_AKRJ_G0017423
protein coding gene Chr10:80028573-80035763 (+)
BALB/cJ MGP_BALBcJ_G0017424
protein coding gene Chr10:78123931-78131122 (+)
C3H/HeJ MGP_C3HHeJ_G0017247
protein coding gene Chr10:80127214-80134419 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017878
protein coding gene Chr10:83506476-83513668 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015566
protein coding gene Chr10:74125345-74132537 (+)
CAST/EiJ MGP_CASTEiJ_G0016814
protein coding gene Chr10:80327711-80337402 (+)
CBA/J MGP_CBAJ_G0017219
protein coding gene Chr10:86745726-86752938 (+)
DBA/2J MGP_DBA2J_G0017325
protein coding gene Chr10:77116356-77125464 (+)
FVB/NJ MGP_FVBNJ_G0017319
protein coding gene Chr10:76302543-76309730 (+)
LP/J MGP_LPJ_G0017396
protein coding gene Chr10:81203416-81210328 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017345
protein coding gene Chr10:88696399-88703588 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017919
protein coding gene Chr10:80009080-80016268 (+)
PWK/PhJ MGP_PWKPhJ_G0016595
protein coding gene Chr10:76985326-76992513 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016384
protein coding gene Chr10:78990123-78997252 (+)
WSB/EiJ MGP_WSBEiJ_G0016874
protein coding gene Chr10:80040741-80050085 (+)



Homology
more
  • Human Ortholog
    ATP5F1D, ATP synthase F1 subunit delta
  • Vertebrate Orthologs
    10
  • Human Ortholog
    ATP5F1D, ATP synthase F1 subunit delta
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ATP5D, MC5DN5
  • Links
    NCBI Gene ID: 513
    neXtProt AC: NX_P30049
    UniProt: P30049

  • Chr Location
    19p13.3; chr19:1241750-1244825 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    1
  • Gene trapped
    2
  • Targeted
    2
  • Genomic Mutations
    1 involving Atp5d
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 66043 NCBI Gene Model | MGI Sequence Detail 7051 C57BL/6J ±  kb
transcript NM_025313 RefSeq | MGI Sequence Detail 931 C57BL/6  
polypeptide Q9D3D9 UniProt | EBI | MGI Sequence Detail 168 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    5 Sequences
  • Protein Ontology
    PR:000004456 ATP synthase subunit delta, mitochondrial
  • InterPro Domains
    IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily
    IPR001469 ATP synthase, F1 complex, delta/epsilon subunit
    IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal
    IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal
Molecular
Reagents
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  • All nucleic 396
    cDNA 395
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
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MGI:1924154, MGI:2143512, MGI:2143703, MGI:2143772, MGI:2143942
References
more
  • Summaries
    All 41
    Developmental Gene Expression 2
    Gene Ontology 8
    Phenotypes 9
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory