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Rbm8a
Gene Detail
Symbol

Name
ID
Rbm8a
RNA binding motif protein 8a
MGI:1913129
Synonyms
2310057C03Rik, Rbm8
Feature Type
protein coding gene
Genetic Map
Chromosome 3
41.93 cM, cytoband H3
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr3:96629928-96633779 bp, + strand
From Ensembl annotation of GRCm38

  3852 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:3744  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 zebrafish

HCOP human homology predictions: RBM8A
Gene Tree: Rbm8a

Human
homologs
RBM8A, RNA binding motif protein 8A
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 9939
neXtProt AC: NX_Q9Y5S9

Human Synonyms: BOV-1A, BOV-1B, BOV-1C, C1DELq21.1, DEL1q21.1, MDS014, RBM8, RBM8B, TAR, Y14, ZNRP, ZRNP1

Human Chr (Location): 1q21.1; chr1:145921556-145927536 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human RBM8A

Mutations,
alleles, and
phenotypes
All mutations/alleles(8) : Gene trapped(4) Targeted(4)
Incidental mutations (data from APF )
Interactions
Rbm8a interacts with 204 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (3 records)
Data Summary: Results (23)    Tissues (23)    Images (4)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 21
RT-PCR 2
cDNA source data(79)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase LOC733972 ; ZFIN rbm8a    NEW 
Molecular
reagents
All nucleic(81) Genomic(1) cDNA(79) Primer pair(1)
Microarray probesets(4)
Other database
links
Ensembl Gene Model ENSMUSG00000038374 (Evidence)
Entrez Gene 60365 (Evidence)
UniGene 261972
DFCI TC1673142, TC1575949, TC1611466
DoTS DT.101366684, DT.483809
Consensus CDS Project CCDS51005.1
International Mouse Phenotyping Consortium Status Rbm8a
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038374 Ensembl Gene Model | MGI Sequence Detail 3852 C57BL/6J ±  kb
transcript ENSMUST00000048915 Ensembl | MGI Sequence Detail 2604 Not Applicable 
polypeptide ENSMUSP00000044548 Ensembl | MGI Sequence Detail 174 Not Applicable 

For the selected sequences
All sequences(30) RefSeq(4)
Polymorphisms
SNPs within 2kb(21 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
Protein Ontology PR:000013809 RNA-binding protein 8A
References
(Earliest) J:64698 Kataoka N, et al., Pre-mRNA splicing imprints mRNA in the nucleus with a novel RNA-binding protein that persists in the cytoplasm. Mol Cell. 2000 Sep;6(3):673-82
(Latest) J:221648 Mao H, et al., Rbm8a haploinsufficiency disrupts embryonic cortical development resulting in microcephaly. J Neurosci. 2015 May 6;35(18):7003-18
All references(34)
Other
accession IDs
MGI:1914219, MGI:2138122

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
07/28/2015
MGI 5.22
The Jackson Laboratory