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Rbm8a Gene Detail
Summary
  • Symbol
    Rbm8a
  • Name
    RNA binding motif protein 8a
  • Synonyms
    2310057C03Rik, Rbm8
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913129
    NCBI Gene: 60365
  • Gene Overview
    MyGene.info: RBM8A
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:96629933-96633791 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 41.93 cM, cytoband H3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    18 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913129
protein coding gene Chr3:96629928-96633791 (.)
129S1/SvImJ MGP_129S1SvImJ_G0027624
protein coding gene Chr3:97515130-97519231 (+)
A/J MGP_AJ_G0027586
protein coding gene Chr3:94396425-94400382 (+)
AKR/J MGP_AKRJ_G0027553
protein coding gene Chr3:96620825-96624684 (+)
BALB/cJ MGP_BALBcJ_G0027596
protein coding gene Chr3:94206303-94210171 (+)
C3H/HeJ MGP_C3HHeJ_G0027328
protein coding gene Chr3:96928576-96932440 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028042
protein coding gene Chr3:101073556-101077419 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025383
protein coding gene Chr3:90673294-90677117 (+)
CAST/EiJ MGP_CASTEiJ_G0026783
protein coding gene Chr3:96181814-96185677 (+)
CBA/J MGP_CBAJ_G0027303
protein coding gene Chr3:104769200-104773057 (+)
DBA/2J MGP_DBA2J_G0027446
protein coding gene Chr3:93726715-93730578 (+)
FVB/NJ MGP_FVBNJ_G0027415
protein coding gene Chr3:91737367-91741962 (+)
LP/J MGP_LPJ_G0027551
protein coding gene Chr3:98800190-98804053 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027441
protein coding gene Chr3:110864376-110868240 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028096
protein coding gene Chr3:96238328-96242190 (+)
PWK/PhJ MGP_PWKPhJ_G0026508
protein coding gene Chr3:93561349-93565364 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026330
protein coding gene Chr3:94537199-94542085 (+)
WSB/EiJ MGP_WSBEiJ_G0026861
protein coding gene Chr3:96683932-96687801 (+)



Homology
more
  • Human Ortholog
    RBM8A, RNA binding motif protein 8A
  • Vertebrate Orthologs
    7
  • Human Ortholog
    RBM8A, RNA binding motif protein 8A
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BOV-1A, BOV-1B, BOV-1C, C1DELq21.1, DEL1q21.1, MDS014, RBM8, RBM8B, TAR, Y14, ZNRP, ZRNP1
  • Links
    NCBI Gene ID: 9939
    neXtProt AC: NX_Q9Y5S9
    UniProt: Q9Y5S9

  • Chr Location
    1q21.1; chr1:145921556-145927536 (-)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with human RBM8A associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    19 phenotypes from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000038374 Ensembl Gene Model | MGI Sequence Detail 3859 C57BL/6J ±  kb
    transcript ENSMUST00000196456 Ensembl | MGI Sequence Detail 2604 Not Applicable  
    polypeptide ENSMUSP00000143190 Ensembl | MGI Sequence Detail 174 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 82
      Genomic 1
      cDNA 80
      Primer pair 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:1914219, MGI:2138122
    References
    more
    • Summaries
      All 41
      Developmental Gene Expression 5
      Diseases 1
      Gene Ontology 4
      Phenotypes 11
    • Earliest
      J:60627 Zhao XF, et al., MAGOH interacts with a novel RNA-binding protein. Genomics. 2000 Jan 1;63(1):145-8
    • Latest
      J:248993 Shinde MY, et al., Phosphoproteomics reveals that glycogen synthase kinase-3 phosphorylates multiple splicing factors and is associated with alternative splicing. J Biol Chem. 2017 Nov 03;292(44):18240-18255

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory