Rbm8a
Gene Detail

Symbol Name ID

Rbm8a RNA binding motif protein 8a MGI:1913129

Synonyms

2310057C03Rik, Rbm8

Feature Type

protein coding gene

Genetic Map

Chromosome 3

41.93 cM, cytoband H3
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr3:96629928-96633779 bp, + strand From Ensembl annotation of GRCm38   3852 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:3744  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 zebrafish

Gene Tree: Rbm8a

Human homologs

Human Homolog		RBM8A, RNA binding motif protein 8A
NCBI Gene ID		9939
neXtProt AC		NX_Q9Y5S9
Human Synonyms		BOV-1A, BOV-1B, BOV-1C, C1DELq21.1, DEL1q21.1, MDS014, RBM8, RBM8B, TAR, Y14, ZNRP, ZRNP1
Human Chr (Location)		1q21.1; chr1:145507557-145513536 (+)  GRCh37.p10
Disease Associations		(1) Diseases Associated with Human RBM8A

Alleles and phenotypes

All alleles(6) : Targeted(2) Gene trapped(4)

Gene Ontology (GO) classifications

All GO classifications: (6 annotations)

Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Component	catalytic step 2 spliceosome, exon-exon junction complex, ...
Function	mRNA binding

External Resources: FuncBase

Expression

Literature Summary: (2 records)
Data Summary: Results (23)    Tissues (23)    Images (4)
Theiler Stages: 21, 23, 28

Assay Type	Results
RNA in situ	21
RT-PCR	2

cDNA source data(77)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(79) Genomic(1) cDNA(77) Primer pair(1)
Microarray probesets(4)

Other database links

Ensembl Gene Model	ENSMUSG00000038374 (Evidence)
Entrez Gene	60365 (Evidence)
UniGene	261972
DFCI	TC1575949, TC1611466, TC1673142
DoTS	DT.101366684, DT.483809
Consensus CDS Project	CCDS51005.1
International Mouse Knockout Project Status	Rbm8a

Sequences

Length	Strain/Species
genomic	ENSMUSG00000038374	Ensembl Gene Model | MGI Sequence Detail	3852	C57BL/6J
transcript	ENSMUST00000048915	Ensembl | MGI Sequence Detail	2604	Not Applicable
polypeptide	ENSMUSP00000044548	Ensembl | MGI Sequence Detail	174	Not Applicable

All sequences(29) RefSeq(4)

Polymorphisms

SNPs(10 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
Protein Ontology	PR:000013809	RNA-binding protein 8A

References

(Earliest) J:60627 Zhao XF, et al., MAGOH interacts with a novel RNA-binding protein. Genomics. 2000 Jan 1;63(1):145-8
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(32)

Other accession IDs

MGI:1914219, MGI:2138122