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Pcnx
Gene Detail
Symbol

Name
ID
Pcnx
pecanex homolog (Drosophila)
MGI:1891924
Synonyms
2900024E21Rik, 3526401J03Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 12
37.98 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr12:81860030-82000924 bp, + strand
From Ensembl annotation of GRCm38

  140895 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:40997  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: PCNX
Gene Tree: Pcnx

Human
homologs
PCNX, pecanex homolog (Drosophila)
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 22990
neXtProt AC: NX_Q96RV3

Human Synonyms: PCNXL1, pecanex

Human Chr (Location): 14q24.2; chr14:70907405-71115382 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Pcnx interacts with 425 markers (Mir1b, Mir7-1, Mir7-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process biological_process
Component integral component of membrane, membrane
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (42)    Tissues (4)    Images (18)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 42
cDNA source data(20)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase pcnx    NEW 
Molecular
reagents
All nucleic(22) cDNA(22)
Microarray probesets(8)
Other database
links
Ensembl Gene Model ENSMUSG00000021140 (Evidence)
Entrez Gene 54604 (Evidence)
DFCI TC1576662, TC1601131, TC1602300, TC1619450, TC1632163
DoTS DT.101185456, DT.101737115, DT.40142534, DT.531183, DT.99854588
NIA Mouse Gene Index U014165
Consensus CDS Project CCDS26025.1
International Mouse Phenotyping Consortium Status Pcnx
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000021140 Ensembl Gene Model | MGI Sequence Detail 140895 C57BL/6J ±  kb
transcript ENSMUST00000021567 Ensembl | MGI Sequence Detail 12139 Not Applicable 
polypeptide ENSMUSP00000021567 Ensembl | MGI Sequence Detail 2344 Not Applicable 

For the selected sequences
All sequences(64) RefSeq(18) UniProt(3)
Polymorphisms
SNPs within 2kb(649 from dbSNP Build 137)    SNPs within 2kb including multiple locations(651)
Protein-related
information
ResourceIDDescription
InterPro IPR007735 Pecanex
Protein Ontology PR:000012424 pecanex-like protein 1
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(28)
Other
accession IDs
MGI:1921274, MGI:1923849, MGI:2144798, MGI:2144802

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory