Pcnx1 MGI Mouse Gene Detail - MGI:1891924

Symbol

Pcnx1
Name

pecanex 1
Synonyms

2900024E21Rik, 3526401J03Rik, Pcnx

Feature Type

protein coding gene
IDs

MGI:1891924
NCBI Gene: 54604
Alliance

gene page
Transcription Start Sites

10 TSS

Sequence Map

Chr12:81906797-82047698 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 12, 37.98 cM
Mapping Data

2 experiments

SNPs within 2kb

649 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1891924	protein coding gene	Chr12:81906688-82047698 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0019908	protein coding gene	Chr12:82355683-82504228 (+)
A/J	MGP_AJ_G0019865	protein coding gene	Chr12:79334012-79474417 (+)
AKR/J	MGP_AKRJ_G0019841	protein coding gene	Chr12:81486495-81628708 (+)
BALB/cJ	MGP_BALBcJ_G0019845	protein coding gene	Chr12:79578505-79721927 (+)
C3H/HeJ	MGP_C3HHeJ_G0019651	protein coding gene	Chr12:81952118-82097328 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0020297	protein coding gene	Chr12:84744746-84892436 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0017914	protein coding gene	Chr12:76309060-76453043 (+)
CAST/EiJ	MGP_CASTEiJ_G0019200	protein coding gene	Chr12:76838856-76996981 (+)
CBA/J	MGP_CBAJ_G0019622	protein coding gene	Chr12:88034097-88190161 (+)
DBA/2J	MGP_DBA2J_G0019737	protein coding gene	Chr12:78911881-79053771 (+)
FVB/NJ	MGP_FVBNJ_G0019723	protein coding gene	Chr12:77765770-77908701 (+)
LP/J	MGP_LPJ_G0019809	protein coding gene	Chr12:82271483-82440673 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0019762	protein coding gene	Chr12:91013501-91175235 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0020331	protein coding gene	Chr12:81030626-81173932 (+)
PWK/PhJ	MGP_PWKPhJ_G0018965	protein coding gene	Chr12:73326930-73470132 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0018759	protein coding gene	Chr12:75533216-75682946 (+)
WSB/EiJ	MGP_WSBEiJ_G0019252	protein coding gene	Chr12:81677242-81827685 (+)

Human Ortholog

PCNX1, pecanex 1

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

PCNX1, pecanex 1
Synonyms

PCNX, PCNXL1, pecanex
Links

HGNC:19740

NCBI Gene ID: 22990

neXtProt AC: NX_Q96RV3

UniProt: Q96RV3
Chr Location

14q24.2; chr14:70907405-71115382 (+) GRCh38

MGI Vertebrate Homology

Pcnx1 stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: PCNX1
Gene Tree

Pcnx1

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Phenotype Summary

2 phenotype references

All Mutations and Alleles

1
Chemically induced (other)

1
Genomic Mutations

1 involving Pcnx1
Incidental Mutations

Mutagenetix , APF , CvDC
Find Mice (IMSR)

97 strains or lines available

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All GO Annotations

1
GO References

1

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

750
Tissues

6
cDNA Data

21
Literature Summary

3

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase pcnx1

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All Sequences

88
RefSeq

22
UniProt

7
CCDS

CCDS26025.1

Ensembl

ENSMUSG00000021140 (Evidence)
NCBI Gene

54604

			Length	Strain/Species	Flank
genomic	ENSMUSG00000021140	Ensembl Gene Model \| MGI Sequence Detail	140902	C57BL/6J	± kb
transcript	ENSMUST00000021567	Ensembl \| MGI Sequence Detail	12139	Not Applicable
polypeptide	ENSMUSP00000021567	Ensembl \| MGI Sequence Detail	2344	Not Applicable

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UniProt

7 Sequences
Protein Ontology

PR:000012424 pecanex-like protein 1

(term hierarchy)
InterPro Domains

IPR007735 Pecanex, C-terminal

IPR039797 Protein Pecanex

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All nucleic 23

cDNA 23

Microarray probesets 8

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MGI:1921274, MGI:1923849, MGI:2144798, MGI:2144802

Summaries

All 29

Developmental Gene Expression 3

Gene Ontology 1

Phenotypes 2
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034

TSS for Pcnx1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr114204	Chr12:81906655-81906698 (+)	-120 bp
Tssr114205	Chr12:81906738-81906810 (+)	-23 bp
Tssr114206	Chr12:81906847-81906895 (+)	74 bp
Tssr114207	Chr12:81906964-81907010 (+)	190 bp
Tssr114208	Chr12:81974930-81974946 (+)	68,141 bp
Tssr114209	Chr12:82005895-82005907 (+)	99,104 bp
Tssr114210	Chr12:82005960-82005968 (+)	99,167 bp
Tssr114211	Chr12:82017942-82017973 (+)	111,161 bp
Tssr114212	Chr12:82017976-82017995 (+)	111,189 bp
Tssr114213	Chr12:82017996-82018019 (+)	111,211 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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