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Pcnx Gene Detail
Summary
  • Symbol
    Pcnx
  • Name
    pecanex homolog
  • Synonyms
    2900024E21Rik, 3526401J03Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1891924
    NCBI Gene: 54604
  • Gene Overview
    MyGene.info: PCNX1
  • Alliance
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:81860028-82000924 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 37.98 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    649 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1891924
protein coding gene Chr12:81860023-82000924 (.)
129S1/SvImJ MGP_129S1SvImJ_G0019908
protein coding gene Chr12:82355683-82504228 (+)
A/J MGP_AJ_G0019865
protein coding gene Chr12:79334012-79474417 (+)
AKR/J MGP_AKRJ_G0019841
protein coding gene Chr12:81486495-81628708 (+)
BALB/cJ MGP_BALBcJ_G0019845
protein coding gene Chr12:79578505-79721927 (+)
C3H/HeJ MGP_C3HHeJ_G0019651
protein coding gene Chr12:81952118-82097328 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020297
protein coding gene Chr12:84744746-84892436 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0017914
protein coding gene Chr12:76309060-76453043 (+)
CAST/EiJ MGP_CASTEiJ_G0019200
protein coding gene Chr12:76838856-76996981 (+)
CBA/J MGP_CBAJ_G0019622
protein coding gene Chr12:88034097-88190161 (+)
DBA/2J MGP_DBA2J_G0019737
protein coding gene Chr12:78911881-79053771 (+)
FVB/NJ MGP_FVBNJ_G0019723
protein coding gene Chr12:77765770-77908701 (+)
LP/J MGP_LPJ_G0019809
protein coding gene Chr12:82271483-82440673 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0019762
protein coding gene Chr12:91013501-91175235 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020331
protein coding gene Chr12:81030626-81173932 (+)
PWK/PhJ MGP_PWKPhJ_G0018965
protein coding gene Chr12:73326930-73470132 (+)
SPRET/EiJ MGP_SPRETEiJ_G0018759
protein coding gene Chr12:75533216-75682946 (+)
WSB/EiJ MGP_WSBEiJ_G0019252
protein coding gene Chr12:81677242-81827685 (+)



Homology
more
  • Human Ortholog
    PCNX1, pecanex 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PCNX1, pecanex 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    PCNX, PCNXL1, pecanex
  • Links
    NCBI Gene ID: 22990
    neXtProt AC: NX_Q96RV3
    UniProt: Q96RV3

  • Chr Location
    14q24.2; chr14:70907405-71115382 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 40997
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: PCNX1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 54604 NCBI Gene Model | MGI Sequence Detail 140897 C57BL/6J ±  kb
transcript NM_018814 RefSeq | MGI Sequence Detail 12139 C57BL/6  
polypeptide Q9QYC1 UniProt | EBI | MGI Sequence Detail 2344 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 23
    cDNA 23

    Microarray probesets 8
Other
Accession IDs
less
MGI:1921274, MGI:1923849, MGI:2144798, MGI:2144802
References
more
  • Summaries
    All 29
    Developmental Gene Expression 2
    Gene Ontology 2
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:239715 Galazo MJ, et al., Corticothalamic Projection Neuron Development beyond Subtype Specification: Fog2 and Intersectional Controls Regulate Intraclass Neuronal Diversity. Neuron. 2016 Jul 06;91(1):90-106

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory