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Emcn Gene Detail
Summary
  • Symbol
    Emcn
  • Name
    endomucin
  • Synonyms
    0610012K22Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1891716
    NCBI Gene: 59308
  • Gene Overview
    MyGene.info: EMCN
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:137341061-137431069 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 63.65 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    696 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1891716
protein coding gene Chr3:137341061-137432185 (+)
129S1/SvImJ MGP_129S1SvImJ_G0027914
protein coding gene Chr3:140346099-140438768 (+)
A/J MGP_AJ_G0027871
protein coding gene Chr3:135421892-135507845 (+)
AKR/J MGP_AKRJ_G0027837
protein coding gene Chr3:139006481-139098209 (+)
BALB/cJ MGP_BALBcJ_G0027884
protein coding gene Chr3:135235641-135330468 (+)
C3H/HeJ MGP_C3HHeJ_G0027613
protein coding gene Chr3:139319465-139411948 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028327
protein coding gene Chr3:145212771-145311852 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025665
protein coding gene Chr3:130537921-130623578 (+)
CAST/EiJ MGP_CASTEiJ_G0027069
protein coding gene Chr3:139091519-139183185 (+)
CBA/J MGP_CBAJ_G0027590
protein coding gene Chr3:150145028-150263392 (+)
DBA/2J MGP_DBA2J_G0027729
protein coding gene Chr3:134524593-134630653 (+)
FVB/NJ MGP_FVBNJ_G0027696
protein coding gene Chr3:131991123-132074986 (+)
LP/J MGP_LPJ_G0027839
protein coding gene Chr3:141760712-141853885 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0027728
protein coding gene Chr3:158278406-158372773 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028385
protein coding gene Chr3:138527104-138624919 (+)
PWK/PhJ MGP_PWKPhJ_G0026793
protein coding gene Chr3:134288297-134377388 (+)
SPRET/EiJ MGP_SPRETEiJ_G0026620
protein coding gene Chr3:136617575-136712856 (+)
WSB/EiJ MGP_WSBEiJ_G0027149
protein coding gene Chr3:139346094-139443694 (+)



Homology
more
  • Human Ortholog
    EMCN, endomucin
  • Vertebrate Orthologs
    7
  • Human Ortholog
    EMCN, endomucin
    Orthology source: HomoloGene, HGNC
  • Synonyms
    EMCN2, MUC14
  • Links
    NCBI Gene ID: 51705
    neXtProt AC: NX_Q9ULC0
    UniProt: Q9ULC0

  • Chr Location
    4q24; chr4:100395341-100518093 (-)  GRCh38.p7

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 59308 NCBI Gene Model | MGI Sequence Detail 90009 C57BL/6J ±  kb
    transcript NM_001163522 RefSeq | MGI Sequence Detail 1476 C57BL/6  
    polypeptide Q9R0H2 UniProt | EBI | MGI Sequence Detail 261 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 54
      cDNA 51
      Primer pair 1
      Other 2

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGI:1915613, MGI:2139669
    References
    more
    • Summaries
      All 190
      Developmental Gene Expression 158
      Diseases 1
      Gene Ontology 3
      Phenotypes 5
    • Earliest
      J:62172 Morgan SM, et al., Biochemical characterization and molecular cloning of a novel endothelial-specific sialomucin. Blood. 1999 Jan 1;93(1):165-75
    • Latest
      J:278572 Stone OA, et al., Paraxial Mesoderm Is the Major Source of Lymphatic Endothelium. Dev Cell. 2019 Jul 22;50(2):247-255.e3

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    last database update
    10/08/2019
    MGI 6.14
    The Jackson Laboratory