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Syncrip Gene Detail
Summary
  • Symbol
    Syncrip
  • Name
    synaptotagmin binding, cytoplasmic RNA interacting protein
  • Synonyms
    2610109K23Rik, 4632417O19Rik, GRY-RBP, hnRNP Q, Nsap1, Nsap1l, pp68, RRM RNA binding protein GRY-RBP
  • Feature Type
    protein coding gene
  • IDs
    MGI:1891690
    NCBI Gene: 56403
  • Gene Overview
    MyGene.info: SYNCRIP
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:88449364-88482397 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 47.24 cM, cytoband E3.2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    37 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1891690
protein coding gene Chr9:88447009-88482574 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035109
protein coding gene Chr9:89324728-89361389 (-)
A/J MGP_AJ_G0035090
protein coding gene Chr9:86206678-86243565 (-)
AKR/J MGP_AKRJ_G0035018
protein coding gene Chr9:88221552-88258442 (-)
BALB/cJ MGP_BALBcJ_G0035078
protein coding gene Chr9:85820107-85856663 (-)
C3H/HeJ MGP_C3HHeJ_G0034790
protein coding gene Chr9:88699446-88737080 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035602
protein coding gene Chr9:91734952-91776530 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032508
protein coding gene Chr9:84929264-84935085 (-)
CAST/EiJ MGP_CASTEiJ_G0034108
protein coding gene Chr9:89152223-89192525 (-)
CBA/J MGP_CBAJ_G0034763
protein coding gene Chr9:94948147-94983673 (-)
DBA/2J MGP_DBA2J_G0034921
protein coding gene Chr9:85732526-85770019 (-)
FVB/NJ MGP_FVBNJ_G0034864
protein coding gene Chr9:84783209-84820360 (-)
LP/J MGP_LPJ_G0035002
protein coding gene Chr9:89520557-89560843 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034906
protein coding gene Chr9:96581015-96624544 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035622
protein coding gene Chr9:88366042-88402073 (-)
PWK/PhJ MGP_PWKPhJ_G0033812
protein coding gene Chr9:85885063-85921876 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033648
protein coding gene Chr9:88539577-88580975 (-)
WSB/EiJ MGP_WSBEiJ_G0034225
protein coding gene Chr9:88400597-88436487 (-)



Homology
more
  • Human Ortholog
    SYNCRIP, synaptotagmin binding cytoplasmic RNA interacting protein
  • Vertebrate Orthologs
    8
  • Human Ortholog
    SYNCRIP, synaptotagmin binding cytoplasmic RNA interacting protein
    Orthology source: HomoloGene, HGNC
  • Synonyms
    GRYRBP, GRY-RBP, hnRNP-Q, HNRNPQ, HNRPQ1, NSAP1, PP68
  • Links
    NCBI Gene ID: 10492
    neXtProt AC: NX_O60506
    UniProt: O60506

  • Chr Location
    6q14.3; chr6:85607784-85643862 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 56403 NCBI Gene Model | MGI Sequence Detail 33034 C57BL/6J ±  kb
transcript NM_019796 RefSeq | MGI Sequence Detail 6933 C57BL/6  
polypeptide Q7TMK9 UniProt | EBI | MGI Sequence Detail 623 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    10 Sequences
  • Protein Ontology
    PR:000015874 heterogeneous nuclear ribonucleoprotein Q
  • InterPro Domains
    IPR034544 Heterogeneous nuclear ribonucleoprotein Q, RNA recognition motif 1
    IPR034548 Heterogeneous nuclear ribonucleoprotein Q, RNA recognition motif 2
    IPR006535 HnRNP R/Q splicing factor
    IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
    IPR035979 RNA-binding domain superfamily
    IPR000504 RNA recognition motif domain
Molecular
Reagents
less
  • All nucleic 31
    cDNA 27
    Primer pair 3
    Other 1

    Microarray probesets 9
Other
Accession IDs
less
MGI:1914396, MGI:1925510, MGI:1930916
References
more
  • Summaries
    All 51
    Developmental Gene Expression 6
    Gene Ontology 5
    Phenotypes 11
  • Earliest
    J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-Le-Grand). 1999 Jul;45(5):737-50
  • Latest
    J:256883 Zhou J, et al., Conserved expression of ultra-conserved noncoding RNA in mammalian nervous system. Biochim Biophys Acta. 2017 Dec;1860(12):1159-1168

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory