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Galnt6
Gene Detail
Symbol

Name
ID
Galnt6
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6
MGI:1891640
Synonyms
GalNAc-T6
Feature Type
protein coding gene
Genetic Map
Chromosome 15
56.39 cM, cytoband F3
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr15:100691813-100729376 bp, - strand
From VEGA annotation of GRCm38

  37564 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:5218  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 2 western clawed frog; 1 zebrafish

HCOP human homology predictions: GALNT6
Gene Tree: Galnt6

Human
homologs
GALNT6, polypeptide N-acetylgalactosaminyltransferase 6
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 11226
neXtProt AC: NX_Q8NCL4

Human Synonyms: GalNAcT6, GALNAC-T6

Human Chr (Location): 12q13; chr12:51351870-51391955 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(8) : Gene trapped(4) Radiation induced(1) Targeted(3)
Genomic Mutations involving Galnt6 (1)
Incidental mutations (data from Mutagenetix , APF )
Phenotype Images(2)
Interactions
Galnt6 interacts with 190 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Component Golgi apparatus, integral component of membrane, ...
Function carbohydrate binding, metal ion binding, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (104)    Tissues (97)    Images (7)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 104
cDNA source data(28)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase LOC100486937 ; ZFIN galnt6    NEW 
Molecular
reagents
All nucleic(28) cDNA(28)
Microarray probesets(6)
Other database
links
VEGA Gene Model OTTMUSG00000035000 (Evidence)
Ensembl Gene Model ENSMUSG00000037280 (Evidence)
Entrez Gene 207839 (Evidence)
UniGene 22969
DFCI TC1579076, TC1651827
DoTS DT.101201269, DT.481728, DT.55262887
NIA Mouse Gene Index U036674, U292815
EC 2.4.1.41
Consensus CDS Project CCDS27843.1
International Mouse Phenotyping Consortium Status Galnt6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000035000 VEGA Gene Model | MGI Sequence Detail 37564 C57BL/6J ±  kb
transcript OTTMUST00000089005 VEGA | MGI Sequence Detail 3796 Not Applicable 
polypeptide OTTMUSP00000048580 VEGA | MGI Sequence Detail 622 Not Applicable 

For the selected sequences
All sequences(49) RefSeq(8) UniProt(1)
Polymorphisms
SNPs within 2kb(494 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001173 Glycosyltransferase 2-like
InterPro IPR029044 Nucleotide-diphospho-sugar transferases
InterPro IPR000772 Ricin B, lectin domain
Protein Ontology PR:000007828 polypeptide N-acetylgalactosaminyltransferase 6
References
(Earliest) J:64930 Bennett EP, et al., Cloning and characterization of a close homologue of human UDP-N-acetyl-alpha-D-galactosamine:Polypeptide N-acetylgalactosaminyltransferase-T3, designated GalNAc-T6. Evidence for genetic but not functional redundancy. J Biol Chem. 1999 Sep 3;274(36):25362-70
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(34)
Other
accession IDs
MGI:2146177

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory