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Galnt6 Gene Detail
Summary
  • Symbol
    Galnt6
  • Name
    polypeptide N-acetylgalactosaminyltransferase 6
  • Synonyms
    GalNAc-T6
  • Feature Type
    protein coding gene
  • IDs
    MGI:1891640
    NCBI Gene: 207839
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:100589694-100627257 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 56.39 cM, cytoband F3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1328 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1891640
 protein coding gene Chr15:100587796-100627257 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022360
 protein coding gene Chr15:102678145-102715403 (-)
A/J MGP_AJ_G0022322
 protein coding gene Chr15:98632353-98669854 (-)
AKR/J MGP_AKRJ_G0022298
 protein coding gene Chr15:101646776-101687954 (-)
BALB/cJ MGP_BALBcJ_G0022326
 protein coding gene Chr15:98743297-98780823 (-)
C3H/HeJ MGP_C3HHeJ_G0022096
 protein coding gene Chr15:101732009-101772846 (-)
C57BL/6NJ MGP_C57BL6NJ_G0022774
 protein coding gene Chr15:106536471-106574627 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020299
 protein coding gene Chr15:94380804-94420596 (-)
CAST/EiJ MGP_CASTEiJ_G0021621
 protein coding gene Chr15:102574637-102615619 (-)
CBA/J MGP_CBAJ_G0022065
 protein coding gene Chr15:110185662-110226806 (-)
DBA/2J MGP_DBA2J_G0022192
 protein coding gene Chr15:97983398-98020992 (-)
FVB/NJ MGP_FVBNJ_G0022171
 protein coding gene Chr15:97010199-97052075 (-)
LP/J MGP_LPJ_G0022263
 protein coding gene Chr15:102832636-102869859 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022192
 protein coding gene Chr15:113909197-113947719 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0022788
 protein coding gene Chr15:101650987-101689119 (-)
PWK/PhJ MGP_PWKPhJ_G0021360
 protein coding gene Chr15:98117445-98156338 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021192
 protein coding gene Chr15:101542656-101585179 (-)
WSB/EiJ MGP_WSBEiJ_G0021671
 protein coding gene Chr15:102275605-102315603 (-)



Homology
more
  • Human Ortholog
    GALNT6, polypeptide N-acetylgalactosaminyltransferase 6
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GALNT6, polypeptide N-acetylgalactosaminyltransferase 6
  • Synonyms
    GalNAcT6, GALNAC-T6
  • Links
    NCBI Gene ID: 11226
    UniProt: Q8NCL4

  • Chr Location
    12q13.13; chr12:51351247-51392867 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    28 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    23
  • GO References
    10
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    817
  • Tissues
    104
  • cDNA Data
    29
  • Literature Summary
    7
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000037280 Ensembl Gene Model | MGI Sequence Detail 37564 C57BL/6J ±  kb
transcript ENSMUST00000052069 Ensembl | MGI Sequence Detail 3798 Not Applicable  
polypeptide ENSMUSP00000056705 Ensembl | MGI Sequence Detail 622 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 31
    cDNA 29
    Primer pair 2

    Microarray probesets 6
Other
Accession IDs
less
MGI:2146177
References
more
  • Summaries
    All 64
    Developmental Gene Expression 7
    Diseases 1
    Gene Ontology 10
    Phenotypes 28
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:285242 Peluso G, et al., Loss of the disease-associated glycosyltransferase Galnt3 alters Muc10 glycosylation and the composition of the oral microbiome. J Biol Chem. 2020 Jan 31;295(5):1411-1425
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory