Galnt6
Gene Detail

Symbol

Name
ID

Galnt6
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6
MGI:1891640

Synonyms

GalNAc-T6

Feature Type

protein coding gene

Genetic Map

Chromosome 15
56.39 cM, cytoband F3
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr15:100691813-100729376 bp, - strand From VEGA annotation of GRCm38   37564 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate
homology

HomoloGene:5218  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 2 western clawed frog; 1 zebrafish

Gene Tree: Galnt6

Human
homologs

Human Homolog		GALNT6, polypeptide N-acetylgalactosaminyltransferase 6
NCBI Gene ID		11226
neXtProt AC		NX_Q8NCL4
Human Synonyms		GalNAcT6, GALNAC-T6
Human Chr (Location)		12q13; chr12:51351870-51391955 (-)  GRCh38

Mutations,
alleles, and
phenotypes

All mutations/alleles(8) : Gene trapped(4) Radiation induced(1) Targeted(3)
Genomic Mutations involving Galnt6 (1)
Incidental mutations (data from Mutagenetix , APF )
Phenotype Images(2)

Interactions

Galnt6 interacts with 191 markers (Mir7-1, Mir7-2, Mir7b, ...)

View All

Gene Ontology
(GO)
classifications

All GO classifications: (9 annotations)

Component	Golgi apparatus, integral component of membrane, ...
Function	carbohydrate binding, metal ion binding, ...

External Resources: FuncBase

Expression

Literature Summary: (2 records)

Data Summary: Results (104)    Tissues (97)    Images (7)    Tissue x Stage Matrix (view)

Assay Type	Results
RNA in situ	104

cDNA source data(28)
External Resources: Allen Institute   GEO   Expression Atlas

Molecular
reagents

All nucleic(28) cDNA(28)
Microarray probesets(6)

Other database
links

VEGA Gene Model	OTTMUSG00000035000 (Evidence)
Ensembl Gene Model	ENSMUSG00000037280 (Evidence)
Entrez Gene	207839 (Evidence)
UniGene	22969
DFCI	TC1579076, TC1651827
DoTS	DT.101201269, DT.55262887, DT.481728
NIA Mouse Gene Index	U036674, U292815
EC	2.4.1.41
Consensus CDS Project	CCDS27843.1
International Mouse Knockout Project Status	Galnt6

Sequences

Length	Strain/Species
genomic	OTTMUSG00000035000	VEGA Gene Model | MGI Sequence Detail	37564	C57BL/6J
transcript	OTTMUST00000089005	VEGA | MGI Sequence Detail	3796	Not Applicable
polypeptide	OTTMUSP00000048580	VEGA | MGI Sequence Detail	622	Not Applicable

All sequences(47) RefSeq(6) UniProt(1)

Polymorphisms

SNPs within 2kb(494 from dbSNP Build 137)

Protein-related
information

Resource	ID	Description
InterPro	IPR001173	Glycosyl transferase, family 2
InterPro	IPR000772	Ricin B lectin domain
Protein Ontology	PR:000007828	polypeptide N-acetylgalactosaminyltransferase 6

References

(Earliest) J:64930 Bennett EP, et al., Cloning and characterization of a close homologue of human UDP-N-acetyl-alpha-D-galactosamine:Polypeptide N-acetylgalactosaminyltransferase-T3, designated GalNAc-T6. Evidence for genetic but not functional redundancy. J Biol Chem. 1999 Sep 3;274(36):25362-70
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(35)

Other
accession IDs

MGI:2146177