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Slc36a2
Gene Detail
Symbol

Name
ID
Slc36a2
solute carrier family 36 (proton/amino acid symporter), member 2
MGI:1891430
Synonyms
A530067G19Rik, PAT2, Tramd1
Feature Type
protein coding gene
Genetic Map
Chromosome 11
32.16 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr11:55158470-55185077 bp, - strand
From VEGA annotation of GRCm38

  26608 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:72100  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog

HCOP human homology predictions: SLC36A2
Gene Tree: Slc36a2

Human
homologs
SLC36A2, solute carrier family 36 (proton/amino acid symporter), member 2
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 153201
neXtProt AC: NX_Q495M3

Human Synonyms: PAT2, TRAMD1

Human Chr (Location): 5q33.1; chr5:151314978-151347590 (-)  GRCh38.p2

Disease Associations: (2) Diseases Associated with Human SLC36A2

Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Genomic Mutations involving Slc36a2 (1)
Incidental mutations (data from Mutagenetix , APF , CvDC )
Interactions
Slc36a2 interacts with 105 markers (Mir1b, Mir17, Mir19b-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (28 annotations)
Process amino acid export, glycine transport, ...
Component cytoplasm, extracellular exosome, ...
Function glycine transmembrane transporter activity, hydrogen:amino acid symporter activity, ...
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (177)    Tissues (103)    Images (30)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 177
cDNA source data(27)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(28) cDNA(27) Primer pair(1)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000005685 (Evidence)
Ensembl Gene Model ENSMUSG00000020264 (Evidence)
Entrez Gene 246049 (Evidence)
UniGene 291280
DFCI TC1595921, TC1582593
DoTS DT.530073, DT.101365975, DT.55272641
NIA Mouse Gene Index U032787
Consensus CDS Project CCDS24709.1
International Mouse Phenotyping Consortium Status Slc36a2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000005685 VEGA Gene Model | MGI Sequence Detail 26608 C57BL/6J ±  kb
transcript OTTMUST00000012651 VEGA | MGI Sequence Detail 2429 Not Applicable 
polypeptide OTTMUSP00000005860 VEGA | MGI Sequence Detail 478 Not Applicable 

For the selected sequences
All sequences(36) RefSeq(8) UniProt(1)
Polymorphisms
SNPs within 2kb(124 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR013057 Amino acid transporter, transmembrane
Protein Ontology PR:000015111 proton-coupled amino acid transporter 2
References
(Earliest) J:78797 Boll M, et al., Functional characterization of two novel mammalian electrogenic proton-dependent amino acid cotransporters. J Biol Chem. 2002 Jun 21;277(25):22966-73
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(34)
Other
accession IDs
MGI:2443560

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/20/2015
MGI 5.22
The Jackson Laboratory