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Ubn1 Gene Detail
Summary
  • Symbol
    Ubn1
  • Name
    ubinuclein 1
  • Synonyms
    1110029L11Rik, 2610108L02Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1891307
    NCBI Gene: 170644
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:5050057-5086289 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 2.49 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    104 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1891307
protein coding gene Chr16:5049988-5086289 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022483
protein coding gene Chr16:1579772-1619053 (+)
A/J MGP_AJ_G0022445
protein coding gene Chr16:1384971-1421868 (+)
AKR/J MGP_AKRJ_G0022422
protein coding gene Chr16:1584178-1619402 (+)
BALB/cJ MGP_BALBcJ_G0022450
protein coding gene Chr16:1538380-1574292 (+)
C3H/HeJ MGP_C3HHeJ_G0022217
protein coding gene Chr16:1605174-1642158 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022899
protein coding gene Chr16:1663967-1701893 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020420
protein coding gene Chr16:1318358-1356062 (+)
CAST/EiJ MGP_CASTEiJ_G0021743
protein coding gene Chr16:1607466-1646481 (+)
CBA/J MGP_CBAJ_G0022186
protein coding gene Chr16:1761166-1799609 (+)
DBA/2J MGP_DBA2J_G0022317
protein coding gene Chr16:1486174-1521505 (+)
FVB/NJ MGP_FVBNJ_G0022292
protein coding gene Chr16:1480979-1517971 (+)
LP/J MGP_LPJ_G0022385
protein coding gene Chr16:1572591-1611350 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022314
protein coding gene Chr16:1596125-1641415 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022911
protein coding gene Chr16:1553760-1589607 (+)
PWK/PhJ MGP_PWKPhJ_G0021483
protein coding gene Chr16:1562610-1599976 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021314
protein coding gene Chr16:1640216-1680369 (+)
WSB/EiJ MGP_WSBEiJ_G0021792
protein coding gene Chr16:1570983-1616264 (+)



Homology
more
  • Human Ortholog
    UBN1, ubinuclein 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    UBN1, ubinuclein 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    VT, VT4
  • Links
    NCBI Gene ID: 29855
    neXtProt AC: NX_Q9NPG3
    UniProt: Q9NPG3

  • Chr Location
    16p13.3; chr16:4846665-4882401 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 9656
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: UBN1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000039473 Ensembl Gene Model | MGI Sequence Detail 36233 C57BL/6J ±  kb
transcript ENSMUST00000052449 Ensembl | MGI Sequence Detail 6455 Not Applicable  
polypeptide ENSMUSP00000061843 Ensembl | MGI Sequence Detail 1135 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 168
    cDNA 168

    Microarray probesets 5
Other
Accession IDs
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MGI:1915552, MGI:1915969, MGI:2146362, MGI:2146625
References
more
  • Summaries
    All 33
    Developmental Gene Expression 1
    Gene Ontology 5
    Phenotypes 5
  • Earliest
    J:74234 Aho S, et al., Ubinuclein, a novel nuclear protein interacting with cellular and viral transcription factors. J Cell Biol. 2000 Mar 20;148(6):1165-76
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory