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Edf1 Gene Detail
Summary
  • Symbol
    Edf1
  • Name
    endothelial differentiation-related factor 1
  • Synonyms
    0610008L11Rik, hypothetical protein 1-9
  • Feature Type
    protein coding gene
  • IDs
    MGI:1891227
    NCBI Gene: 59022
  • Gene Overview
    MyGene.info: EDF1
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:25557847-25562082 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 2, 17.39 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    52 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1891227
protein coding gene Chr2:25557821-25562082 (.)
129S1/SvImJ MGP_129S1SvImJ_G0025454
protein coding gene Chr2:23458627-23462862 (+)
A/J MGP_AJ_G0025431
protein coding gene Chr2:22545108-22549343 (+)
AKR/J MGP_AKRJ_G0025401
protein coding gene Chr2:23314899-23319134 (+)
BALB/cJ MGP_BALBcJ_G0025427
protein coding gene Chr2:22666960-22671195 (+)
C3H/HeJ MGP_C3HHeJ_G0025188
protein coding gene Chr2:23243130-23247365 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025871
protein coding gene Chr2:24198155-24202390 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023282
protein coding gene Chr2:21456932-21461126 (+)
CAST/EiJ MGP_CASTEiJ_G0024651
protein coding gene Chr2:23112133-23116352 (+)
CBA/J MGP_CBAJ_G0025166
protein coding gene Chr2:25037211-25041446 (+)
DBA/2J MGP_DBA2J_G0025299
protein coding gene Chr2:22386560-22390795 (+)
FVB/NJ MGP_FVBNJ_G0025261
protein coding gene Chr2:22134512-22138747 (+)
LP/J MGP_LPJ_G0025385
protein coding gene Chr2:23395898-23400133 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025292
protein coding gene Chr2:25232961-25237196 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025930
protein coding gene Chr2:23254937-23259172 (+)
PWK/PhJ MGP_PWKPhJ_G0024399
protein coding gene Chr2:22207701-22212685 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024199
protein coding gene Chr2:23399787-23404008 (+)
WSB/EiJ MGP_WSBEiJ_G0024720
protein coding gene Chr2:23326057-23330292 (+)



Homology
more
  • Human Ortholog
    EDF1, endothelial differentiation related factor 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    EDF1, endothelial differentiation related factor 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CFAP280, EDF-1, MBF1
  • Links
    NCBI Gene ID: 8721
    neXtProt AC: NX_O60869
    UniProt: O60869

  • Chr Location
    9q34.3; chr9:136862114-136866336 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 2809
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: EDF1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000015092 Ensembl Gene Model | MGI Sequence Detail 4236 C57BL/6J ±  kb
transcript ENSMUST00000015236 Ensembl | MGI Sequence Detail 722 Not Applicable  
polypeptide ENSMUSP00000015236 Ensembl | MGI Sequence Detail 148 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000006895 endothelial differentiation-related factor 1
  • InterPro Domains
    IPR001387 Cro/C1-type helix-turn-helix domain
    IPR010982 Lambda repressor-like, DNA-binding domain superfamily
    IPR013729 Multiprotein bridging factor 1, N-terminal
Molecular
Reagents
less
  • All nucleic 131
    Genomic 1
    cDNA 130

    Microarray probesets 3
Other
Accession IDs
less
MGI:1913291, MGI:2143996
References
more
  • Summaries
    All 38
    Developmental Gene Expression 4
    Gene Ontology 5
    Phenotypes 6
  • Earliest
    J:64911 Inoue S, et al., Growth suppression of Escherichia coli by induction of expression of mammalian genes with transmembrane or ATPase domains. Biochem Biophys Res Commun. 2000 Feb 16;268(2):553-61
  • Latest
    J:198054 Lopez-Victorio CJ, et al., EDF-1 downregulates the CaM/Cn/NFAT signaling pathway during adipogenesis. Biochem Biophys Res Commun. 2013 Mar 1;432(1):146-51

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory