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Rab9
Gene Detail
 Symbol
Name
ID
Rab9
RAB9, member RAS oncogene family
MGI:1890695
Synonyms 2410064E05Rik, SID 99
Feature Type protein coding gene
Genetic Map
Chromosome X
77.47 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
ChrX:166457253-166479867 bp, - strand
From VEGA annotation of GRCm38

  22615 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:20900  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: Ras-related protein Rab
Gene Tree: Rab9

Human
homologs
Human Homolog RAB9A, RAB9A, member RAS oncogene family
NCBI Gene ID 9367
neXtProt AC  NX_P51151
Human Synonyms  RAB9
Human Chr (Location)  Xp22.2; chrX:13689121-13709825 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(40) : Gene trapped(40)
Incidental mutations (data from APF )
 
Male chimeras hemizygous for a gene trapped allele appear normal at E9.5.
 
Phenotype Images(2)
Interactions
Rab9 interacts with 152 markers (Mir1b, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (18 annotations)
Process GTP catabolic process, positive regulation of exocytosis, ...
Component cytoplasmic vesicle, endosome, ...
Function GDP binding, GTPase activity, ...
External Resources: FuncBase
Expression
cDNA source data(59)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(59) cDNA(59)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000019544 (Evidence)
Ensembl Gene ModelENSMUSG00000079316 (Evidence)
Entrez Gene56382 (Evidence)
UniGene25306
DFCITC1576310
DoTSDT.493216
NIA Mouse Gene IndexU039863, U120901
PDB1YZL
Consensus CDS ProjectCCDS30527.1
International Mouse Knockout Project StatusRab9
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000019544 VEGA Gene Model | MGI Sequence Detail 22615 C57BL/6J ±  kb
transcript OTTMUST00000046680 VEGA | MGI Sequence Detail 876 Not Applicable 
polypeptide OTTMUSP00000021088 VEGA | MGI Sequence Detail 202 Not Applicable 

For the selected sequences
All sequences(37) RefSeq(6) UniProt(4)
Polymorphisms SNPs within 2kb(74 from dbSNP Build 137)    SNPs within 2kb including multiple locations(76)
Protein-related
information
ResourceIDDescription
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
InterPro IPR001806 Small GTPase superfamily
InterPro IPR003579 Small GTPase superfamily, Rab type
InterPro IPR005225 Small GTP-binding protein domain
Protein Ontology PR:000013644 ras-related protein Rab-9A
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:163340 Cox BJ, et al., Phenotypic annotation of the mouse X chromosome. Genome Res. 2010 Aug;20(8):1154-64
All references(38)
Other
accession IDs
MGI:1914627, MGI:2147853

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/23/2014
MGI 5.19
The Jackson Laboratory