Trim39 MGI Mouse Gene Detail - MGI:1890659 - tripartite motif-containing 39

Trim39 Gene Detail

Symbol

Trim39
Name

tripartite motif-containing 39
Synonyms

1100001D15Rik, E130103K13Rik, RBCC-B30.2, RING-B box-coiled-coil-B30.2, Rnf23, tfp

Human Ortholog

TRIM39, tripartite motif containing 39
Orthology source: HomoloGene, HGNC
Synonyms

RNF23, TFP, TRIM39B
Links

HGNC:10065

NCBI Gene ID: 56658

neXtProt AC: NX_Q9HCM9

UniProt: Q9HCM9
Chr Location

6p22.1; chr6:30326844-30343729 (+) GRCh38.p7

HomoloGene

Vertebrate Homology Class 10940
1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;2 chicken;1 zebrafish
HCOP

human homology predictions: TRIM39
Protein SuperFamily

tripartite motif-containing protein
Gene Tree

Trim39

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Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	receptor	receptor binding	RNA binding	transcription	transferase	transporter

Biological Process

nucleic acid-templated transcription	carbohydrate derivative metabolism	cell death	cell differentiation	cell proliferation	cellular component organization	establishment of localization	homeostatic process	immune system process	lipid metabolic process	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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			Length	Strain/Species	Flank
genomic	OTTMUSG00000037273	VEGA Gene Model \| MGI Sequence Detail	13375	C57BL/6J	± kb
transcript	OTTMUST00000096148	VEGA \| MGI Sequence Detail	2914	Not Applicable
polypeptide	OTTMUSP00000053684	VEGA \| MGI Sequence Detail	496	Not Applicable

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MGI:1915679, MGI:2443031

Summaries

All 31

Developmental Gene Expression 2

Gene Ontology 3

Phenotypes 7
Earliest

J:67238 Orimo A, et al., Molecular cloning of testis-abundant finger Protein/Ring finger protein 23 (RNF23), a novel RING-B box-coiled coil-B30.2 protein on the class I region of the human MHC. Biochem Biophys Res Commun. 2000 Sep 16;276(1):45-51
Latest

J:190754 Ermakova O, et al., Construction and phenotypic analysis of mice carrying a duplication of the major histocompatibility class I (MHC-I) locus. Mamm Genome. 2012 Aug;23(7-8):443-53

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources Funding Information Warranty Disclaimer & Copyright Notice Send questions and comments to User Support.	last database update 07/11/2017 MGI 6.10