About   Help   FAQ
Take the Alliance for Genomic Resources User Survey
Trim39 Gene Detail
Summary
  • Symbol
    Trim39
  • Name
    tripartite motif-containing 39
  • Synonyms
    1100001D15Rik, E130103K13Rik, RBCC-B30.2, RING-B box-coiled-coil-B30.2, Rnf23, tfp
  • Feature Type
    protein coding gene
  • IDs
    MGI:1890659
    NCBI Gene: 79263
Location & Maps
more
  • Sequence Map
    Chr17:36258873-36272247 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser
  • Download
    Sequence
      13375 bp   ±  kb flank

  • Genome Browsers
    VEGA | Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 19.01 cM
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    TRIM39, tripartite motif containing 39
  • Vertebrate Orthologs
    9
  • Human Ortholog
    TRIM39, tripartite motif containing 39
    Orthology source: HomoloGene, HGNC
  • Synonyms
    RNF23, TFP, TRIM39B
  • Links
    NCBI Gene ID: 56658
    neXtProt AC: NX_Q9HCM9

  • Chr Location
    6p21.3; chr6:30326844-30343729 (+)  GRCh38.p2
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    11
  • Gene trapped
    7
  • Targeted
    4
  • Genomic Mutations
    1 involving Trim39
  • Incidental Mutations
    Mutagenetix , APF
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    21
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    69
  • Tissues
    48
  • cDNA Data
    44
  • Literature Summary
    2
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000037273 VEGA Gene Model | MGI Sequence Detail 13375 C57BL/6J ±  kb
transcript OTTMUST00000096148 VEGA | MGI Sequence Detail 2914 Not Applicable  
polypeptide OTTMUSP00000053684 VEGA | MGI Sequence Detail 496 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 45
    cDNA 45

    Microarray probesets 3
Other
Accession IDs
less
MGI:1915679, MGI:2443031
References
more
  • Summaries
    All 31
    Developmental Gene Expression 2
    Gene Ontology 4
    Phenotypes 7
  • Earliest
    J:67238 Orimo A, et al., Molecular cloning of testis-abundant finger Protein/Ring finger protein 23 (RNF23), a novel RING-B box-coiled coil-B30.2 protein on the class I region of the human MHC. Biochem Biophys Res Commun. 2000 Sep 16;276(1):45-51
  • Latest
    J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support. 		last database update
09/20/2016
MGI 6.05 		The Jackson Laboratory