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Galnt10
Gene Detail
Symbol

Name
ID
Galnt10
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10
MGI:1890480
Synonyms
C330012K04Rik, GalNAc-T10, Galnt9
Feature Type
protein coding gene
Genetic Map
Chromosome 11
35.27 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr11:57645442-57787514 bp, + strand
From VEGA annotation of GRCm38

  142073 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:14924  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog

Gene Tree: Galnt10

Human
homologs
Human Homolog GALNT10, polypeptide N-acetylgalactosaminyltransferase 10
NCBI Gene ID 55568
neXtProt AC  NX_Q86SR1
Human Synonyms  GALNACT10, PPGALNACT10, PPGANTASE10
Human Chr (Location)  5q33.2; chr5:154190735-154420984 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(22) : Gene trapped(21) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a disruption in this gene display a normal phenotype.
 
Interactions
Galnt10 interacts with 268 markers (Mir1a-1, Mir1a-2, Mir9-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (9 annotations)
Process protein O-linked glycosylation
Component Golgi apparatus, integral component of membrane, ...
Function carbohydrate binding, metal ion binding, ...
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (111)    Tissues (110)    Images (4)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 111
cDNA source data(94)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(96) cDNA(95) Primer pair(1)
Microarray probesets(6)
Other database
links
VEGA Gene ModelOTTMUSG00000005711 (Evidence)
Ensembl Gene ModelENSMUSG00000020520 (Evidence)
Entrez Gene171212 (Evidence)
UniGene271670
DFCITC1580049, TC1598197, TC1629110, TC1631059, TC1647000
DoTSDT.101303352, DT.110536325, DT.490258, DT.55230444, DT.94270751, DT.99841167
NIA Mouse Gene IndexU012641
EC2.4.1.41
Consensus CDS ProjectCCDS24719.1
International Mouse Knockout Project StatusGalnt10
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000005711 VEGA Gene Model | MGI Sequence Detail 142073 C57BL/6J ±  kb
transcript OTTMUST00000012702 VEGA | MGI Sequence Detail 4715 Not Applicable 
polypeptide OTTMUSP00000005884 VEGA | MGI Sequence Detail 603 Not Applicable 

For the selected sequences
All sequences(61) RefSeq(14) UniProt(4)
Polymorphisms
SNPs within 2kb(1736 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001173 Glycosyl transferase, family 2
InterPro IPR000772 Ricin B lectin domain
Protein Ontology PR:000007819 polypeptide N-acetylgalactosaminyltransferase 10
References
(Earliest) J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(41)
Other
accession IDs
MGI:1924599, MGI:2144381

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory