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Galnt10
Gene Detail
Symbol

Name
ID
Galnt10
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10
MGI:1890480
Synonyms
C330012K04Rik, GalNAc-T10, Galnt9
Feature Type
protein coding gene
Genetic Map
Chromosome 11
35.27 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr11:57645442-57787514 bp, + strand
From VEGA annotation of GRCm38

  142073 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:14924  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog

HCOP human homology predictions: GALNT10
Gene Tree: Galnt10

Human
homologs
GALNT10, polypeptide N-acetylgalactosaminyltransferase 10
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 55568
neXtProt AC: NX_Q86SR1

Human Synonyms: GALNACT10, PPGALNACT10, PPGANTASE10

Human Chr (Location): 5q33.2; chr5:154190735-154420984 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(22) : Gene trapped(21) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a disruption in this gene display a normal phenotype.
 
Interactions
Galnt10 interacts with 268 markers (Mir1a-1, Mir1a-2, Mir9-1, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (3 records)
Data Summary: Results (111)    Tissues (110)    Images (4)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 111
cDNA source data(94)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase galnt10    NEW 
Molecular
reagents
All nucleic(96) cDNA(95) Primer pair(1)
Microarray probesets(6)
Other database
links
VEGA Gene Model OTTMUSG00000005711 (Evidence)
Ensembl Gene Model ENSMUSG00000020520 (Evidence)
Entrez Gene 171212 (Evidence)
UniGene 271670
DFCI TC1580049, TC1598197, TC1647000, TC1631059, TC1629110
DoTS DT.110536325, DT.490258, DT.101303352, DT.55230444, DT.99841167, DT.94270751
NIA Mouse Gene Index U012641
EC 2.4.1.-, 2.4.1.41
Consensus CDS Project CCDS24719.1
International Mouse Phenotyping Consortium Status Galnt10
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000005711 VEGA Gene Model | MGI Sequence Detail 142073 C57BL/6J ±  kb
transcript OTTMUST00000012702 VEGA | MGI Sequence Detail 4715 Not Applicable 
polypeptide OTTMUSP00000005884 VEGA | MGI Sequence Detail 603 Not Applicable 

For the selected sequences
All sequences(61) RefSeq(14) UniProt(4)
Polymorphisms
SNPs within 2kb(1736 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001173 Glycosyl transferase, family 2
InterPro IPR000772 Ricin B lectin domain
Protein Ontology PR:000007819 polypeptide N-acetylgalactosaminyltransferase 10
References
(Earliest) J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(42)
Other
accession IDs
MGI:1924599, MGI:2144381

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/20/2015
MGI 5.22
The Jackson Laboratory