Galnt10
Gene Detail

Symbol Name ID

Galnt10 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 MGI:1890480

Synonyms

C330012K04Rik, GalNAc-T10, Galnt9

Feature Type

protein coding gene

Genetic Map

Chromosome 11

35.27 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr11:57645442-57787514 bp, + strand From VEGA annotation of GRCm38   142073 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Mammalian homology

human; rat; cattle; chimpanzee; dog, domestic    (Mammalian Orthology)
Comparative Map (Mouse/Human Galnt10 ± 2 cM)

Gene Tree: Galnt10

Human ortholog

GALNT10 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10 (GalNAc-T10) NCBI Gene ID 55568
Human Synonyms: GALNACT10, PPGALNACT10, PPGANTASE10
Human Chr5:153570295-153800544 bp, + strand Reference GRCh37.p2 Primary Assembly

Alleles and phenotypes

All alleles(22) : Targeted(1) Gene trapped(21)
 

Mice homozygous for a disruption in this gene display a normal phenotype.

 

Gene Ontology (GO) classifications

All GO classifications: (8 annotations)

Process	protein O-linked glycosylation
Component	Golgi apparatus, integral to membrane, ...
Function	metal ion binding, polypeptide N-acetylgalactosaminyltransferase activity, ...

External Resources: FuncBase

Expression

Literature Summary: (3 records)
Data Summary: Results (111)    Tissues (110)    Images (4)
Theiler Stages: 11, 20, 22, 24

Assay Type	Results
RNA in situ	111

cDNA source data(95)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(97) cDNA(96) Primer pair(1)
Microarray probesets(6)

Other database links

VEGA Gene Model	OTTMUSG00000005711 (Evidence)
Ensembl Gene Model	ENSMUSG00000020520 (Evidence)
Entrez Gene	171212 (Evidence)
UniGene	271670
DFCI	TC1580049, TC1598197, TC1629110, TC1631059, TC1647000
DoTS	DT.101303352, DT.110536325, DT.490258, DT.55230444, DT.94270751, DT.99841167
NIA Mouse Gene Index	U012641
EC	2.4.1.41
Consensus CDS Project	CCDS24719.1
International Mouse Knockout Project Status	Galnt10

Sequences

Length	Strain/Species
genomic	OTTMUSG00000005711	VEGA Gene Model | MGI Sequence Detail	142073	C57BL/6J
transcript	OTTMUST00000012702	VEGA | MGI Sequence Detail	4715	Not Applicable
polypeptide	OTTMUSP00000005884	VEGA | MGI Sequence Detail	603	Not Applicable

All sequences(49) RefSeq(2) UniProt(4)

Polymorphisms

SNPs(649 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR001173	Glycosyl transferase, family 2
InterPro	IPR000772	Ricin B lectin domain
Protein Ontology	PR:000007819	polypeptide N-acetylgalactosaminyltransferase 10

References

(Earliest) J:93290 Araki K, et al., Exchangeable gene trap using the Cre/mutated lox system. Cell Mol Biol (Noisy-le-grand). 1999 Jul;45(5):737-50
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(41)

Other accession IDs

MGI:1924599, MGI:2144381