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Pdss1
Gene Detail
 Symbol
Name
ID
Pdss1
prenyl (solanesyl) diphosphate synthase, subunit 1
MGI:1889278
Synonyms 2610203G20Rik, 2700031G06Rik, mSPS1, Tprt
Feature Type protein coding gene
Genetic Map
Chromosome 2
15.17 cM, cytoband A3
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr2:22895522-22940266 bp, + strand
From VEGA annotation of GRCm38

  44745 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:5353  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Pdss1

Human
homologs
Human Homolog PDSS1, prenyl (decaprenyl) diphosphate synthase, subunit 1
NCBI Gene ID 23590
neXtProt AC  NX_Q5T2R2
Human Synonyms  COQ1, COQ10D2, DPS, hDPS1, SPS, TPRT, TPT, TPT 1
Human Chr (Location)  10p12.1; chr10:26697424-26746798 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human PDSS1
Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Gene trapped(4) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Pdss1 interacts with 155 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process isoprenoid biosynthetic process, protein heterotetramerization, ...
Component mitochondrion
Function metal ion binding, protein heterodimerization activity, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (94)    Tissues (94)   
Theiler Stages: 22
Assay TypeResults
RNA in situ 94
cDNA source data(4)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(7) cDNA(7)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000016619 (Evidence)
Ensembl Gene ModelENSMUSG00000026784 (Evidence)
Entrez Gene56075 (Evidence)
NIA Mouse Gene IndexU001452
EC2.5.1.91
Consensus CDS ProjectCCDS38057.1
International Mouse Knockout Project StatusPdss1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000016619 VEGA Gene Model | MGI Sequence Detail 44745 C57BL/6J ±  kb
transcript OTTMUST00000040189 VEGA | MGI Sequence Detail 1642 Not Applicable 
polypeptide OTTMUSP00000044745 VEGA | MGI Sequence Detail 409 Not Applicable 

For the selected sequences
All sequences(52) RefSeq(12) UniProt(5)
Polymorphisms SNPs within 2kb(16 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR000092 Polyprenyl synthetase
InterPro IPR017446 Polyprenyl synthetase-related
InterPro IPR008949 Terpenoid synthase
Protein Ontology PR:000012521 decaprenyl-diphosphate synthase subunit 1
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(31)
Other
accession IDs
MGI:1914443, MGI:1919716

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory