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P3h1 Gene Detail
Summary
  • Symbol
    P3h1
  • Name
    prolyl 3-hydroxylase 1
  • Synonyms
    2410024C15Rik, Gros1, Lepre1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1888921
    NCBI Gene: 56401
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:119232915-119248975 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 55.34 cM, cytoband D1
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    151 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1888921
protein coding gene Chr4:119232892-119248977 (.)
129S1/SvImJ MGP_129S1SvImJ_G0028693
protein coding gene Chr4:120416967-120433013 (+)
A/J MGP_AJ_G0028653
protein coding gene Chr4:115686411-115702482 (+)
AKR/J MGP_AKRJ_G0028606
protein coding gene Chr4:118196674-118212743 (+)
BALB/cJ MGP_BALBcJ_G0028676
protein coding gene Chr4:116303880-116320135 (+)
C3H/HeJ MGP_C3HHeJ_G0028391
protein coding gene Chr4:119762606-119778505 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029117
protein coding gene Chr4:124986958-125003150 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026394
protein coding gene Chr4:109788131-109803912 (+)
CAST/EiJ MGP_CASTEiJ_G0027822
protein coding gene Chr4:117084567-117101545 (+)
CBA/J MGP_CBAJ_G0028358
protein coding gene Chr4:128373511-128389429 (+)
DBA/2J MGP_DBA2J_G0028505
protein coding gene Chr4:116278434-116294509 (+)
FVB/NJ MGP_FVBNJ_G0028471
protein coding gene Chr4:114791799-114808003 (+)
LP/J MGP_LPJ_G0028605
protein coding gene Chr4:120534617-120550665 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028499
protein coding gene Chr4:133237681-133256663 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029154
protein coding gene Chr4:119271327-119287378 (+)
PWK/PhJ MGP_PWKPhJ_G0027545
protein coding gene Chr4:113199728-113215989 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027371
protein coding gene Chr4:115693557-115709578 (+)
WSB/EiJ MGP_WSBEiJ_G0027902
protein coding gene Chr4:119274215-119290257 (+)



Homology
more
  • Human Ortholog
    P3H1, prolyl 3-hydroxylase 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    P3H1, prolyl 3-hydroxylase 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    GROS1, LEPRE1, OI8
  • Links
    NCBI Gene ID: 64175
    neXtProt AC: NX_Q32P28
    UniProt: Q32P28

  • Chr Location
    1p34.2; chr1:42746335-42767084 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 10509
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: P3H1
  • Gene Tree
Human Diseases
more
  • Diseases
    1 with P3h1 mouse models; 1 with human P3H1 associations

Human Disease Mouse Models
      
IDs
View 1 model
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    24 phenotypes from 3 alleles in 3 genetic backgrounds
    5 images
    22 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit reduced size, disproportional reduction in long bone length, decreased bone density, decreased bone mineral density, reduced body fat, delayed ossification, and abnormal collagen networks in the skin and tendons.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000028641 Ensembl Gene Model | MGI Sequence Detail 16061 C57BL/6J ±  kb
    transcript ENSMUST00000102662 Ensembl | MGI Sequence Detail 2977 Not Applicable  
    polypeptide ENSMUSP00000099723 Ensembl | MGI Sequence Detail 748 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      4 Sequences
    • EC
    • InterPro Domains
      IPR005123 Oxoglutarate/iron-dependent dioxygenase
      IPR006620 Prolyl 4-hydroxylase, alpha subunit
      IPR011990 Tetratricopeptide-like helical domain superfamily
    Molecular
    Reagents
    less
    • All nucleic 67
      cDNA 65
      Primer pair 2

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:1919438
    References
    more
    • Summaries
      All 57
      Developmental Gene Expression 4
      Diseases 1
      Gene Ontology 10
      Phenotypes 22
    • Earliest
      J:95868 Wassenhove-McCarthy DJ, et al., Molecular characterization of a novel basement membrane-associated proteoglycan, leprecan. J Biol Chem. 1999 Aug 27;274(35):25004-17
    • Latest
      J:230866 Fratzl-Zelman N, et al., Bone matrix hypermineralization in prolyl-3 hydroxylase 1 deficient mice. Bone. 2016 Apr;85:15-22

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory