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Taf9 Gene Detail
Summary
  • Symbol
    Taf9
  • Name
    TATA-box binding protein associated factor 9
  • Synonyms
    2310012M09Rik, Taf2g
  • Feature Type
    protein coding gene
  • IDs
    MGI:1888697
    NCBI Gene: 108143
  • Gene Overview
    MyGene.info: TAF9
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:100651579-100656060 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 53.23 cM, cytoband D1
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    10 from dbSNP Build 142
  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1888697
protein coding gene Chr13:100651343-100656060 (.)
129S1/SvImJ MGP_129S1SvImJ_G0020890
protein coding gene Chr13:102578884-102584656 (+)
A/J MGP_AJ_G0031122
protein coding gene Chr6:113727569-113728447 (-)
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0020841
protein coding gene Chr13:99319659-99323671 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0021275
protein coding gene Chr13:105634223-105640772 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0026840
protein coding gene Chr3:102523692-102524650 (-)
CBA/J MGP_CBAJ_G0020592
protein coding gene Chr13:109796945-109807360 (+)
DBA/2J MGP_DBA2J_G0030972
protein coding gene Chr6:112659232-112659981 (-)
FVB/NJ MGP_FVBNJ_G0020698
protein coding gene Chr13:97114690-97119038 (+)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0030960
protein coding gene Chr6:130237655-130244651 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031619
protein coding gene Chr6:116801158-116807295 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0020207
protein coding gene Chr13:101536509-101542958 (+)



Homology
more
  • Human Ortholog
    TAF9, TATA-box binding protein associated factor 9
  • Vertebrate Orthologs
    10
  • Human Ortholog
    TAF9, TATA-box binding protein associated factor 9
    Orthology source: HomoloGene, HGNC
  • Synonyms
    MGC:5067, STAF31/32, TAF2G, TAFII31, TAFII-31, TAFII32, TAFII-32, TAFIID32
  • Links
    NCBI Gene ID: 6880
    neXtProt AC: NX_Q16594
    UniProt: Q16594

  • Chr Location
    5q13.2; chr5:69364743-69370013 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000052293 Ensembl Gene Model | MGI Sequence Detail 4482 C57BL/6J ±  kb
transcript ENSMUST00000190594 Ensembl | MGI Sequence Detail 1962 Not Applicable  
polypeptide ENSMUSP00000140244 Ensembl | MGI Sequence Detail 264 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 6
Other
Accession IDs
less
MGI:1916866, MGI:2145171, MGI:2145378
References
more
  • Summaries
    All 37
    Developmental Gene Expression 11
    Gene Ontology 7
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:245730 Bardot P, et al., The TAF10-containing TFIID and SAGA transcriptional complexes are dispensable for early somitogenesis in the mouse embryo. Development. 2017 Oct 15;144(20):3808-3818

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory