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Ly6i Gene Detail
Summary
  • Symbol
    Ly6i
  • Name
    lymphocyte antigen 6 complex, locus I
  • Synonyms
    Ly-6I, Ly-6M
  • Feature Type
    protein coding gene
  • IDs
    MGI:1888480
    NCBI Gene: 57248
  • Member of
    Ly6 cluster
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:74979534-74983430 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 34.29 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    166 from dbSNP Build 142
  • Strain Annotations
    11
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1888480
protein coding gene Chr15:74979534-74983434 (-)
129S1/SvImJ no annotation
A/J MGP_AJ_G0021906
protein coding gene Chr15:72512627-72516555 (+)
AKR/J MGP_AKRJ_G0021890
protein coding gene Chr15:74413466-74417275 (+)
BALB/cJ MGP_BALBcJ_G0021915
protein coding gene Chr15:72472355-72476170 (+)
C3H/HeJ MGP_C3HHeJ_G0021687
protein coding gene Chr15:74508615-74512692 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022352
protein coding gene Chr15:77613614-77617510 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0021654
protein coding gene Chr15:80543227-80547045 (+)
DBA/2J MGP_DBA2J_G0021779
protein coding gene Chr15:72068940-72072809 (+)
FVB/NJ MGP_FVBNJ_G0021760
protein coding gene Chr15:71081331-71085161 (+)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0021784
protein coding gene Chr15:85838954-85842960 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022373
protein coding gene Chr15:74355659-74359568 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    23 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000022586 Ensembl Gene Model | MGI Sequence Detail 3897 C57BL/6J ±  kb
transcript ENSMUST00000023250 Ensembl | MGI Sequence Detail 1156 Not Applicable  
polypeptide ENSMUSP00000023250 Ensembl | MGI Sequence Detail 134 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 1
    Genomic 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:2146060
References
more
  • Summaries
    All 38
    Diseases 1
    Gene Ontology 3
    Phenotypes 23
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
02/16/2021
MGI 6.16
The Jackson Laboratory