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Ly6i
Gene Detail
 Symbol
Name
ID
Member of
Ly6i
lymphocyte antigen 6 complex, locus I
MGI:1888480
Ly6 cluster
Synonyms Ly-6I, Ly-6M
Feature Type protein coding gene
Genetic Map
Chromosome 15
34.29 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr15:74979812-74983430 bp, - strand
From NCBI annotation of GRCm38

  3619 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:113718  Vertebrate Homology Class
7 mouse; 6 rat

Protein SuperFamily: Ly-6-like protein
Gene Tree: Ly6i

Mutations,
alleles, and
phenotypes
All mutations/alleles(1) : Radiation induced(1)
Genomic Mutations involving Ly6i (1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Ly6i interacts with 20 markers (Mir31, Mir34b, Mir34c, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Component anchored component of membrane, membrane, ...
External Resources: FuncBase
Expression
External Resources: GEO   Expression Atlas
Molecular
reagents
All nucleic(1) Genomic(1)
Microarray probesets(2)
Other database
links
Ensembl Gene ModelENSMUSG00000022586 (Evidence)
Entrez Gene57248 (Evidence)
DFCITC1595737
DoTSDT.91334907
NIA Mouse Gene IndexU036297
Consensus CDS ProjectCCDS27539.1
International Mouse Knockout Project StatusLy6i
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 57248 NCBI Gene Model | MGI Sequence Detail 3619 C57BL/6J ±  kb
transcript NM_020498 RefSeq | MGI Sequence Detail 878 Not Specified 
polypeptide Q9WU67 UniProt | EBI | MGI Sequence Detail 134 Not Applicable 

For the selected sequences
All sequences(31) RefSeq(14) UniProt(2)
Polymorphisms SNPs within 2kb(115 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001526 CD59 antigen
InterPro IPR018363 CD59 antigen, conserved site
InterPro IPR016054 Ly-6 antigen / uPA receptor -like
Protein Ontology PR:000010028 lymphocyte antigen 6I
Graphical View of Protein Domain Structure
References (Earliest) J:62857 Pflugh DL, et al., Ly-6I, a new member of the murine Ly-6 superfamily with a distinct pattern of expression. J Immunol. 2000 Jul 1;165(1):313-21
(Latest) J:178605 Stier MT, et al., Polymorphisms in Ly6 genes in Msq1 encoding susceptibility to mouse adenovirus type 1. Mamm Genome. 2011 Nov 20;
All references(18)
Other
accession IDs
MGI:2146060

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/23/2014
MGI 5.19
The Jackson Laboratory