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Nsmf
Gene Detail
Symbol

Name
ID
Nsmf
NMDA receptor synaptonuclear signaling and neuronal migration factor
MGI:1861755
Synonyms
Jacob, Nelf
Feature Type
protein coding gene
Genetic Map
Chromosome 2
16.94 cM, cytoband A3
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr2:25054355-25062881 bp, + strand
From VEGA annotation of GRCm38

  8527 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:10648  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 2 zebrafish

HCOP human homology predictions: NSMF
Gene Tree: Nsmf

Human
homologs
NSMF, NMDA receptor synaptonuclear signaling and neuronal migration factor
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 26012
neXtProt AC: NX_Q6X4W1

Human Synonyms: HH9, NELF

Human Chr (Location): 9q34.3; chr9:137447570-137459357 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human NSMF

Mutations,
alleles, and
phenotypes
All mutations/alleles(1) : Targeted(1)
Incidental mutations (data from APF )
Interactions
Nsmf interacts with 167 markers (Mir15a, Mir15b, Mir16-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (32 annotations)
Process cellular response to amino acid stimulus, cellular response to electrical stimulus, ...
Component apical dendrite, cell junction, ...
Function calcium-dependent protein binding
External Resources: FuncBase
Expression
Literature Summary: (5 records)
Data Summary: Results (80)    Tissues (47)    Images (30)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 72
Northern blot 8
cDNA source data(81)
Other mouse links: Allen Institute   GENSAT   GEO   Expression Atlas
Other vertebrate links: GEISHA NSMF ; Xenbase nsmf    NEW 
Molecular
reagents
All nucleic(85) cDNA(84) Other(1)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000011615 (Evidence)
Ensembl Gene Model ENSMUSG00000006476 (Evidence)
Entrez Gene 56876 (Evidence)
UniGene 42956
DFCI TC1572320, TC1594053, TC1590902, TC1591425, TC1756884, TC1601456
DoTS DT.97359086, DT.94374462, DT.91388530, DT.99865463, DT.101738330, DT.101381780, DT.530129, DT.103579358, DT.101236720
NIA Mouse Gene Index U001474
Consensus CDS Project CCDS15745.1, CCDS15746.1, CCDS15747.1, CCDS50523.1
International Mouse Phenotyping Consortium Status Nsmf
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000011615 VEGA Gene Model | MGI Sequence Detail 8527 C57BL/6J ±  kb
transcript OTTMUST00000027151 VEGA | MGI Sequence Detail 2957 Not Applicable 
polypeptide OTTMUSP00000012357 VEGA | MGI Sequence Detail 532 Not Applicable 

For the selected sequences
All sequences(127) RefSeq(22) UniProt(12)
Polymorphisms
SNPs within 2kb(44 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR000048 IQ motif, EF-hand binding site
InterPro IPR027401 Myosin-like IQ motif-containing domain
Protein Ontology PR:000011136 nasal embryonic luteinizing hormone-releasing hormone factor
References
(Earliest) J:63404 Kramer PR, et al., Novel gene expressed in nasal region influences outgrowth of olfactory axons and migration of luteinizing hormone-releasing hormone (LHRH) neurons. Genes Dev. 2000 Jul 15;14(14):1824-34
(Latest) J:204492 Patel MC, et al., BRD4 coordinates recruitment of pause release factor P-TEFb and the pausing complex NELF/DSIF to regulate transcription elongation of interferon-stimulated genes. Mol Cell Biol. 2013 Jun;33(12):2497-507
All references(36)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/28/2015
MGI 5.22
The Jackson Laboratory