About   Help   FAQ
Nom1
Gene Detail
 Symbol
Name
ID
Nom1
nucleolar protein with MIF4G domain 1
MGI:1861749
Synonyms D5Kng1, Gm1040, LOC381627
Feature Type protein coding gene
Genetic Map
Chromosome 5
15.00 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr5:29434664-29453506 bp, + strand
From VEGA annotation of GRCm38

  18843 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:39776  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Nom1

Human
homologs
Human Homolog NOM1, nucleolar protein with MIF4G domain 1
NCBI Gene ID 64434
neXtProt AC  NX_Q5C9Z4
Human Synonyms  C7orf3, PPP1R113, SGD1
Human Chr (Location)  7q36.3; chr7:156949723-156973182 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(1) Radiation induced(3) Targeted(2)
Genomic Mutations involving Nom1 (3)
Incidental mutations (data from Mutagenetix , APF )
Alleles Annotated to Human Diseases(1)   
Interactions
Nom1 interacts with 296 markers (Mir1b, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Component nucleolus, nucleus
Function poly(A) RNA binding, RNA binding
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (56)    Tissues (10)    Images (25)
Theiler Stages: 23
Assay TypeResults
RNA in situ 56
cDNA source data(40)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(40) cDNA(40)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000026730 (Evidence)
Ensembl Gene ModelENSMUSG00000001569 (Evidence)
Entrez Gene433864 (Evidence)
UniGene262815
DFCITC1582564
DoTSDT.91326789
NIA Mouse Gene IndexU297078
Consensus CDS ProjectCCDS19149.1
International Mouse Knockout Project StatusNom1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000026730 VEGA Gene Model | MGI Sequence Detail 18843 C57BL/6J ±  kb
transcript OTTMUST00000066120 VEGA | MGI Sequence Detail 4882 Not Applicable 
polypeptide OTTMUSP00000033076 VEGA | MGI Sequence Detail 854 Not Applicable 

For the selected sequences
All sequences(26) RefSeq(8) UniProt(1)
Polymorphisms SNPs within 2kb(130 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR016024 Armadillo-type fold
InterPro IPR003891 Initiation factor eIF-4 gamma, MA3
InterPro IPR003890 MIF4G-like, type 3
InterPro IPR016021 MIF4-like, type 1/2/3
Protein Ontology PR:000031937 nucleolar MIF4G domain-containing protein 1
References (Earliest) J:63394 Clark RM, et al., A novel candidate gene for mouse and human preaxial polydactyly with altered expression in limbs of Hemimelic extra-toes mutant mice. Genomics. 2000 Jul 1;67(1):19-27
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(28)
Other
accession IDs
MGI:2685886

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
09/23/2014
MGI 5.19
The Jackson Laboratory