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Ccl28 Gene Detail
Summary
  • Symbol
    Ccl28
  • Name
    chemokine (C-C motif) ligand 28
  • Synonyms
    CCK1, Scya28
  • Feature Type
    protein coding gene
  • IDs
    MGI:1861731
    NCBI Gene: 56838
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:119623819-119654359 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    296 from dbSNP Build 142
  • Strain Annotations
    17
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1861731
protein coding gene Chr13:119610520-119654359 (+)
129S1/SvImJ MGP_129S1SvImJ_G0020975
protein coding gene Chr13:122573281-122606629 (+)
A/J MGP_AJ_G0020925
protein coding gene Chr13:117704309-117738261 (+)
AKR/J MGP_AKRJ_G0020900
protein coding gene Chr13:121163442-121198105 (+)
BALB/cJ MGP_BALBcJ_G0020925
protein coding gene Chr13:118272416-118302693 (+)
C3H/HeJ MGP_C3HHeJ_G0020713
protein coding gene Chr13:121015754-121054661 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021361
protein coding gene Chr13:126264045-126294191 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018930
protein coding gene Chr13:112546823-112576110 (+)
CAST/EiJ MGP_CASTEiJ_G0020234
protein coding gene Chr13:120761819-120797573 (+)
CBA/J MGP_CBAJ_G0020676
protein coding gene Chr13:130997073-131032595 (+)
DBA/2J MGP_DBA2J_G0020799
protein coding gene Chr13:117181336-117211605 (+)
FVB/NJ MGP_FVBNJ_G0020783
protein coding gene Chr13:115779205-115811130 (+)
LP/J MGP_LPJ_G0020876
protein coding gene Chr13:122641477-122678868 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020809
protein coding gene Chr13:131778537-131812096 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021396
protein coding gene Chr13:120788227-120820372 (+)
PWK/PhJ MGP_PWKPhJ_G0019986
protein coding gene Chr13:116068497-116099805 (+)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0020292
protein coding gene Chr13:121383431-121415862 (+)



Homology
more
  • Human Ortholog
    CCL28, C-C motif chemokine ligand 28
  • Vertebrate Orthologs
    7
  • Human Ortholog
    CCL28, C-C motif chemokine ligand 28
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CCK1, MEC, SCYA28
  • Links
    NCBI Gene ID: 56477
    neXtProt AC: NX_Q9NRJ3
    UniProt: Q9NRJ3

  • Chr Location
    5p12; chr5:43356972-43412391 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000074715 Ensembl Gene Model | MGI Sequence Detail 30541 C57BL/6J ±  kb
transcript ENSMUST00000099241 Ensembl | MGI Sequence Detail 3740 Not Applicable  
polypeptide ENSMUSP00000096847 Ensembl | MGI Sequence Detail 130 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 28
    cDNA 27
    Other 1

    Microarray probesets 3
References
more
  • Summaries
    All 32
    Gene Ontology 6
    Phenotypes 4
  • Earliest
    J:63604 Wang W, et al., Identification of a novel chemokine (CCL28), which binds CCR10 (GPR2). J Biol Chem. 2000 Jul 21;275(29):22313-23
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory