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Aldh9a1
Gene Detail
Symbol

Name
ID
Aldh9a1
aldehyde dehydrogenase 9, subfamily A1
MGI:1861622
Synonyms
ESTM40, TMABA-DH
Feature Type
protein coding gene
Genetic Map
Chromosome 1
74.74 cM, cytoband H2
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr1:167349991-167368530 bp, + strand
From NCBI annotation of GRCm38

  18540 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:55483  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 2 zebrafish

Protein SuperFamily: NAD-dependent aldehyde dehydrogenase
Gene Tree: Aldh9a1

Human
homologs
Human Homolog ALDH9A1, aldehyde dehydrogenase 9 family, member A1
NCBI Gene ID 223
neXtProt AC  NX_P49189
Human Synonyms  ALDH4, ALDH7, ALDH9, E3, TMABADH
Human Chr (Location)  1q23.1; chr1:165662212-165698663 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Gene trapped(2) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Aldh9a1 interacts with 138 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (3 records)
Data Summary: Results (134)    Tissues (134)    Images (12)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 134
cDNA source data(185)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(187) cDNA(185) Primer pair(2)
Microarray probesets(5)
Other database
links
Ensembl Gene ModelENSMUSG00000026687 (Evidence)
Entrez Gene56752 (Evidence)
UniGene330055
DFCITC1572145, TC1745711, TC1729406
DoTSDT.535923, DT.101400547
NIA Mouse Gene IndexU001056
EC1.2.1.47, 1.2.1.3
Consensus CDS ProjectCCDS35765.1
International Mouse Knockout Project StatusAldh9a1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 56752 NCBI Gene Model | MGI Sequence Detail 18540 C57BL/6J ±  kb
transcript NM_019993 RefSeq | MGI Sequence Detail 2834 C57BL/6 
polypeptide Q9JLJ2 UniProt | EBI | MGI Sequence Detail 494 Not Applicable 

For the selected sequences
All sequences(67) RefSeq(4) UniProt(17)
Polymorphisms
SNPs within 2kb(166 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR016160 Aldehyde dehydrogenase, conserved site
InterPro IPR016163 Aldehyde dehydrogenase, C-terminal
InterPro IPR015590 Aldehyde dehydrogenase domain
InterPro IPR016162 Aldehyde dehydrogenase, N-terminal
InterPro IPR016161 Aldehyde/histidinol dehydrogenase
Protein Ontology PR:000003933 4-trimethylaminobutyraldehyde dehydrogenase
Graphical View of Protein Domain Structure
References
(Earliest) J:52606 Eddleston J, et al., Physical and transcriptional map of a 3-Mb region of mouse chromosome 1 containing the gene for the neural tube defect mutant loop-tail (Lp). Genomics. 1999 Mar 1;56(2):149-59
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(39)
Other
accession IDs
MGI:1334434

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/11/2014
MGI 5.20
The Jackson Laboratory