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Trim17 Gene Detail
Summary
  • Symbol
    Trim17
  • Name
    tripartite motif-containing 17
  • Synonyms
    Rnf16, terf
  • Feature Type
    protein coding gene
  • IDs
    MGI:1861440
    NCBI Gene: 56631
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:58845511-58863923 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 36.38 cM, cytoband B1.2-B1.3
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    298 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1861440
 protein coding gene Chr11:58845511-58863924 (+)
129S1/SvImJ MGP_129S1SvImJ_G0018385
 protein coding gene Chr11:58745772-58753538 (+)
A/J MGP_AJ_G0018354
 protein coding gene Chr11:56505179-56512999 (+)
AKR/J MGP_AKRJ_G0018324
 protein coding gene Chr11:58405696-58413610 (+)
BALB/cJ MGP_BALBcJ_G0018325
 protein coding gene Chr11:56874385-56882295 (+)
C3H/HeJ MGP_C3HHeJ_G0018138
 protein coding gene Chr11:58292945-58300808 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018777
 protein coding gene Chr11:60621919-60629390 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016421
 protein coding gene Chr11:53769489-53787495 (+)
CAST/EiJ MGP_CASTEiJ_G0017695
 protein coding gene Chr11:58401395-58419774 (+)
CBA/J MGP_CBAJ_G0018112
 protein coding gene Chr11:63266387-63274254 (+)
DBA/2J MGP_DBA2J_G0018221
 protein coding gene Chr11:56182919-56190852 (+)
FVB/NJ MGP_FVBNJ_G0018212
 protein coding gene Chr11:55830849-55838701 (+)
LP/J MGP_LPJ_G0018294
 protein coding gene Chr11:59361520-59369224 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0018236
 protein coding gene Chr11:64421142-64430417 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018817
 protein coding gene Chr11:58401540-58421705 (+)
PWK/PhJ MGP_PWKPhJ_G0017466
 protein coding gene Chr11:56769522-56777489 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017259
 protein coding gene Chr11:58218403-58226550 (+)
WSB/EiJ MGP_WSBEiJ_G0017746
 protein coding gene Chr11:58095680-58105128 (+)



Homology
more
  • Human Ortholog
    TRIM17, tripartite motif containing 17
  • Vertebrate Orthologs
    19
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRIM17, tripartite motif containing 17
  • Synonyms
    RBCC, RNF16, terf
  • Links
    NCBI Gene ID: 51127
    neXtProt AC: NX_Q9Y577
    UniProt: Q9Y577

  • Chr Location
    1q42.13; chr1:228407935-228416861 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 2 alleles in 2 genetic backgrounds
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Male mice exhibit normal testis size, testis to body weight, spermatozoa, and sperm motility.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    17
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    6
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 56631 NCBI Gene Model | MGI Sequence Detail 18413 C57BL/6J ±  kb
transcript NM_031172 RefSeq | MGI Sequence Detail 3026 Not Specified  
polypeptide Q7TPM3 UniProt | EBI | MGI Sequence Detail 477 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 3
References
more
  • Summaries
    All 35
    Gene Ontology 6
    Phenotypes 9
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:279039 Lu Y, et al., CRISPR/Cas9-mediated genome editing reveals 30 testis-enriched genes dispensable for male fertility in mice. Biol Reprod. 2019 Aug 1;101(2):501-511
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory