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Pcdh7 Gene Detail
Summary
  • Symbol
    Pcdh7
  • Name
    protocadherin 7
  • Synonyms
    BH-protocadherin
  • Feature Type
    protein coding gene
  • IDs
    MGI:1860487
    NCBI Gene: 54216
  • Gene Overview
    MyGene.info: PCDH7
Location & Maps
more
  • Sequence Map
    Chr5:57717967-58133230 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      415264 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 31.65 cM, cytoband C3-D
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    PCDH7, protocadherin 7
  • Vertebrate Orthologs
    9
  • Human Ortholog
    PCDH7, protocadherin 7
    Orthology source: HGNC, HomoloGene
  • Synonyms
    BH-Pcdh, BHPCDH, PPP1R120
  • Links
    NCBI Gene ID: 5099
    neXtProt AC: NX_O60245

  • Chr Location
    4p15; chr4:30720319-31146801 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    17 phenotype references
  • All Mutations and Alleles
    4
  • Chemically induced (other)
    2
  • Radiation induced
    1
  • Spontaneous
    1
  • Genomic Mutations
    4 involving Pcdh7
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000050929 VEGA Gene Model | MGI Sequence Detail 415264 C57BL/6J ±  kb
transcript OTTMUST00000129080 VEGA | MGI Sequence Detail 8785 Not Applicable  
polypeptide OTTMUSP00000069380 VEGA | MGI Sequence Detail 1255 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    2571 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    cDNA 10

    Microarray probesets 6
References
more
  • Summaries
    All 27
    Developmental Gene Expression 8
    Gene Ontology 3
    Phenotypes 17
  • Earliest
    J:59566 Yoshida K, et al., cDNA cloning and chromosomal mapping of mouse BH-protocadherin. DNA Seq. 1999;10(1):43-7
  • Latest
    J:222248 Fossat N, et al., Context-specific function of the LIM homeobox 1 transcription factor in head formation of the mouse embryo. Development. 2015 Jun 1;142(11):2069-79

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
06/22/2016
MGI 6.04
The Jackson Laboratory