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Pcdh7 Gene Detail
Summary
  • Symbol
    Pcdh7
  • Name
    protocadherin 7
  • Synonyms
    BH-protocadherin
  • Feature Type
    protein coding gene
  • IDs
    MGI:1860487
    NCBI Gene: 54216
  • Gene Overview
    MyGene.info: PCDH7
  • Alliance
  • Transcription Start Sites
    11 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:57717967-58133230 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 31.65 cM, cytoband C3-D
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2571 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1860487
protein coding gene Chr5:57717596-58133236 (.)
129S1/SvImJ MGP_129S1SvImJ_G0029558
protein coding gene Chr5:57009291-57447580 (+)
A/J MGP_AJ_G0029526
protein coding gene Chr5:54902628-55317546 (+)
AKR/J MGP_AKRJ_G0029474
protein coding gene Chr5:56694261-57113062 (+)
BALB/cJ MGP_BALBcJ_G0029535
protein coding gene Chr5:55506216-55928366 (+)
C3H/HeJ MGP_C3HHeJ_G0029258
protein coding gene Chr5:56979986-57416930 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029989
protein coding gene Chr5:59295663-59771275 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027229
protein coding gene Chr5:51704053-52111603 (+)
CAST/EiJ MGP_CASTEiJ_G0028666
protein coding gene Chr5:55981501-56425407 (+)
CBA/J MGP_CBAJ_G0029227
protein coding gene Chr5:61265943-61751352 (+)
DBA/2J MGP_DBA2J_G0029373
protein coding gene Chr5:54961307-55390231 (+)
FVB/NJ MGP_FVBNJ_G0029333
protein coding gene Chr5:54223080-54655206 (+)
LP/J MGP_LPJ_G0029458
protein coding gene Chr5:57390407-57833670 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029361
protein coding gene Chr5:63003707-63580902 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030022
protein coding gene Chr5:56297764-56732650 (+)
PWK/PhJ MGP_PWKPhJ_G0028390
protein coding gene Chr5:54004609-54424009 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028224
protein coding gene Chr5:55748516-56171672 (+)
WSB/EiJ MGP_WSBEiJ_G0028747
protein coding gene Chr5:56455670-56881594 (+)



Homology
more
  • Human Ortholog
    PCDH7, protocadherin 7
  • Vertebrate Orthologs
    9
  • Human Ortholog
    PCDH7, protocadherin 7
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BH-Pcdh, BHPCDH, PPP1R120
  • Links
    NCBI Gene ID: 5099
    neXtProt AC: NX_O60245
    UniProt: O60245

  • Chr Location
    4p15.1; chr4:30720378-31146801 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    17 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000029108 Ensembl Gene Model | MGI Sequence Detail 415264 C57BL/6J ±  kb
transcript ENSMUST00000191837 Ensembl | MGI Sequence Detail 8785 Not Applicable  
polypeptide ENSMUSP00000142319 Ensembl | MGI Sequence Detail 1255 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 16
    cDNA 12
    Primer pair 3
    Other 1

    Microarray probesets 6
References
more
  • Summaries
    All 47
    Developmental Gene Expression 10
    Gene Ontology 5
    Phenotypes 17
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:261000 Xiao H, et al., Overexpression of protocadherin 7 inhibits neuronal survival by downregulating BIRC5 in vitro. Exp Cell Res. 2018 May 1;366(1):71-80

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory