Nagk MGI Mouse Gene Detail - MGI:1860418 - N-acetylglucosamine kinase

Symbol

Nagk
Name

N-acetylglucosamine kinase
Synonyms

GlcNAc kinase

Feature Type

protein coding gene
IDs

MGI:1860418
NCBI Gene: 56174
Gene Overview

MyGene.info: NAGK
Alliance

gene page
Transcription Start Sites

7 TSS

Sequence Map

Chr6:83795005-83802556 bp, + strand
From NCBI annotation of GRCm38

View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 6, 35.96 cM, cytoband D1
Mapping Data

2 experiments

SNPs within 2kb

64 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1860418	protein coding gene	Chr6:83794982-83804018 (.)
129S1/SvImJ	MGP_129S1SvImJ_G0030941	protein coding gene	Chr6:84830902-84839932 (+)
A/J	MGP_AJ_G0030910	protein coding gene	Chr6:81600286-81609332 (+)
AKR/J	MGP_AKRJ_G0030838	protein coding gene	Chr6:83961072-83970140 (+)
BALB/cJ	MGP_BALBcJ_G0030920	protein coding gene	Chr6:81628359-81637400 (+)
C3H/HeJ	MGP_C3HHeJ_G0030790	protein coding gene	Chr6:100438745-100447786 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0031380	protein coding gene	Chr6:87176561-87185592 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0028566	protein coding gene	Chr6:79964510-79973493 (+)
CAST/EiJ	MGP_CASTEiJ_G0030029	protein coding gene	Chr6:83988783-83997846 (+)
CBA/J	MGP_CBAJ_G0030607	protein coding gene	Chr6:90595624-90604671 (+)
DBA/2J	MGP_DBA2J_G0030760	protein coding gene	Chr6:80913396-80922412 (+)
FVB/NJ	MGP_FVBNJ_G0030713	protein coding gene	Chr6:80125653-80134699 (+)
LP/J	MGP_LPJ_G0030839	protein coding gene	Chr6:84834787-84843822 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0030749	protein coding gene	Chr6:94858917-94867959 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0031404	protein coding gene	Chr6:83792038-83801109 (+)
PWK/PhJ	MGP_PWKPhJ_G0029744	protein coding gene	Chr6:79830414-79839527 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0029572	protein coding gene	Chr6:82615034-82624076 (+)
WSB/EiJ	MGP_WSBEiJ_G0030110	protein coding gene	Chr6:84209501-84218540 (+)

Human Ortholog

NAGK, N-acetylglucosamine kinase

Vertebrate Orthologs

9

Human Ortholog

NAGK, N-acetylglucosamine kinase
Orthology source: HomoloGene, HGNC
Synonyms

GNK, HSA242910
Links

HGNC:17174

NCBI Gene ID: 55577

neXtProt AC: NX_Q9UJ70

UniProt: Q9UJ70
Chr Location

2p13.3; chr2:71068246-71078868 (+) GRCh38.p7

HomoloGene

Vertebrate Homology Class 9720
1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
HCOP

human homology predictions: NAGK
Gene Tree

Nagk

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Phenotype Summary

3 phenotypes from 2 alleles in 2 genetic backgrounds
14 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	immune system	integument	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	neoplasm	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	vision/eye

Click cells to view annotations.

All Mutations and Alleles

10
Gene trapped

2
Spontaneous

1
Targeted

7
Genomic Mutations

1 involving Nagk
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

18 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

A gene trap insertion into an intron of this gene results in no obvious phenotype.

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All GO Annotations

11
GO References

4

External Resources

FuncBase

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell death	cell differentiation	cell population proliferation	cellular component organization	establishment of localization	homeostatic process	immune system process	lipid metabolic process	nucleic acid-templated transcription	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

135
Tissues

117
cDNA Data

5
Literature Summary

3

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase nagk

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Nagk interacts with 141 markers (Mir1a-1, Mir1a-2, Mir7-1, ...) View All

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All Sequences

64
RefSeq

16
UniProt

4
CCDS

CCDS20286.1, CCDS85072.1

Ensembl

ENSMUSG00000034744 (Evidence)
NCBI Gene

56174

			Length	Strain/Species	Flank
genomic	56174	NCBI Gene Model \| MGI Sequence Detail	7552	C57BL/6J	± kb
transcript	NM_001347315	RefSeq \| MGI Sequence Detail	1369	Not Specified
polypeptide	Q9QZ08	UniProt \| EBI \| MGI Sequence Detail	343	Not Applicable

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UniProt

4 Sequences
Protein Ontology

PR:000010960 N-acetyl-D-glucosamine kinase

(term hierarchy)
EC

2.7.1.59
InterPro Domains

IPR002731 ATPase, BadF/BadG/BcrA/BcrD type

IPR039758 N-acetyl-D-glucosamine kinase NAGK-like

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All nucleic 9

cDNA 8

Other 1

Microarray probesets 6

Summaries

All 36

Developmental Gene Expression 3

Gene Ontology 4

Phenotypes 14
Earliest

J:62543 Hinderlich S, et al., Molecular cloning and characterization of murine and human N-acetylglucosamine kinase. Eur J Biochem. 2000 Jun;267(11):3301-8
Latest

J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514

TSS for Nagk:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr57376	Chr6:83794974-83794985 (+)	-25 bp
Tssr57377	Chr6:83795002-83795015 (+)	4 bp
Tssr57378	Chr6:83795022-83795034 (+)	23 bp
Tssr57379	Chr6:83795158-83795169 (+)	159 bp
Tssr57380	Chr6:83795182-83795204 (+)	188 bp
Tssr57381	Chr6:83795205-83795238 (+)	217 bp
Tssr57382	Chr6:83795246-83795255 (+)	246 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources Funding Information Warranty Disclaimer & Copyright Notice Send questions and comments to User Support.	last database update 01/08/2019 MGI 6.13