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Cxcl11 Pseudogene Detail
Summary
  • Symbol
    Cxcl11
  • Name
    chemokine (C-X-C motif) ligand 11
  • Synonyms
    betaR1, b-R1, H174, IP9, ITAC, I-TAC, Scyb11, SCYB9B
  • Feature Type
    polymorphic pseudogene
  • IDs
    MGI:1860203
    NCBI Gene: 56066
  • Gene Overview
    MyGene.info: CXCL11
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:92359544-92363296 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 5, 46.61 cM, cytoband E3
  • Mapping Data
    5 experiments
Strain
Comparison
more
  • SNPs within 2kb
    80 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1860203
polymorphic pseudogene Chr5:92359544-92365485 (-)
129S1/SvImJ MGP_129S1SvImJ_G0009945
polymorphic pseudogene Chr5:93544370-93554511 (-)
A/J MGP_AJ_G0009929
polymorphic pseudogene Chr5:89829408-89835353 (-)
AKR/J MGP_AKRJ_G0009912
polymorphic pseudogene Chr5:92767185-92773124 (-)
BALB/cJ MGP_BALBcJ_G0009913
polymorphic pseudogene Chr5:90712473-90718471 (-)
C3H/HeJ MGP_C3HHeJ_G0009845
polymorphic pseudogene Chr5:93170288-93177257 (-)
C57BL/6NJ MGP_C57BL6NJ_G0010162
polymorphic pseudogene Chr5:97257755-97263717 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0008955
polymorphic pseudogene Chr5:85477860-85483795 (-)
CAST/EiJ MGP_CASTEiJ_G0009663
polymorphic pseudogene Chr5:92549589-92555462 (-)
CBA/J MGP_CBAJ_G0009819
polymorphic pseudogene Chr5:100628982-100638728 (-)
DBA/2J MGP_DBA2J_G0009847
polymorphic pseudogene Chr5:89875176-89881077 (-)
FVB/NJ MGP_FVBNJ_G0009865
polymorphic pseudogene Chr5:88720577-88726609 (-)
LP/J MGP_LPJ_G0009942
polymorphic pseudogene Chr5:93910724-93918344 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0009831
polymorphic pseudogene Chr5:105545723-105552737 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0010133
polymorphic pseudogene Chr5:92293687-92300544 (-)
PWK/PhJ MGP_PWKPhJ_G0009584
polymorphic pseudogene Chr5:88940119-88946225 (-)
SPRET/EiJ MGP_SPRETEiJ_G0009415
polymorphic pseudogene Chr5:91660248-91670082 (-)
WSB/EiJ MGP_WSBEiJ_G0009767
polymorphic pseudogene Chr5:92763539-92769495 (-)



Homology
more
  • Human Ortholog
    CXCL11, C-X-C motif chemokine ligand 11
  • Human Ortholog
    CXCL11, C-X-C motif chemokine ligand 11
    Orthology source: HGNC
  • Synonyms
    b-R1, H174, IP9, IP-9, I-TAC, SCYB11, SCYB9B
  • Links
    NCBI Gene ID: 6373
    neXtProt AC: NX_O14625
    UniProt: O14625

  • Chr Location
    4q21.1; chr4:76033682-76036197 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Spontaneous
    1
  • Genomic Mutations
    3 involving Cxcl11
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic 56066 NCBI Gene Model | MGI Sequence Detail 3753 C57BL/6J ±  kb
transcript NR_038116 RefSeq | MGI Sequence Detail 1605 C57BL/6  
polypeptide Q9JHH5 UniProt | EBI | MGI Sequence Detail 100 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 15
    Genomic 1
    cDNA 13
    Primer pair 1

    Microarray probesets 4
References
more
  • Summaries
    All 35
    Developmental Gene Expression 3
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:240190 Ha Y, et al., Critical Role of the CXCL10/C-X-C Chemokine Receptor 3 Axis in Promoting Leukocyte Recruitment and Neuronal Injury during Traumatic Optic Neuropathy Induced by Optic Nerve Crush. Am J Pathol. 2017 Feb;187(2):352-365

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory