Crlf3 MGI Mouse Gene Detail - MGI:1860086 - cytokine receptor-like factor 3

Crlf3 Gene Detail

Symbol

Crlf3
Name

cytokine receptor-like factor 3
Synonyms

Creme9, cytor4

Feature Type

protein coding gene
IDs

MGI:1860086
NCBI Gene: 54394
Gene Overview

MyGene.info: CRLF3

Sequence Map

Chr11:80046493-80080991 bp, - strand
From VEGA annotation of GRCm38

Mouse Genome Browser
Download
Sequence

34499 bp ± kb flank
Genome Browsers

VEGA | Ensembl | UCSC | NCBI

Genetic Map

Chromosome 11, 47.43 cM
Mapping Data

3 experiments

Human Ortholog

CRLF3, cytokine receptor like factor 3

Vertebrate Orthologs

10

Human Ortholog

CRLF3, cytokine receptor like factor 3
Orthology source: HomoloGene, HGNC
Synonyms

CREME9, CREME-9, CRLM9, CYTOR4, FRWS, p48.2
Links

HGNC:17177

NCBI Gene ID: 51379

neXtProt AC: NX_Q8IUI8

UniProt: Q8IUI8
Chr Location

17q11.2; chr17:30782684-30824760 (-) GRCh38.p7

HomoloGene

Vertebrate Homology Class 9327
1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
HCOP

human homology predictions: CRLF3
Gene Tree

Crlf3

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Phenotype Summary

8 phenotypes from 2 alleles in 3 genetic backgrounds
24 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

47
Chemically induced (other)

1
Gene trapped

41
Targeted

5
Genomic Mutations

2 involving Crlf3
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

35 strains or lines available

Mice homozygous for a knock-out allele exhibit decreased lean body mass, decreased platelet cell number and increased circulating fructosamine level.

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All GO Annotations

10
GO References

1

External Resources

FuncBase

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	receptor	receptor binding	RNA binding	transcription	transferase	transporter

Biological Process

nucleic acid-templated transcription	carbohydrate derivative metabolism	cell death	cell differentiation	cell proliferation	cellular component organization	establishment of localization	homeostatic process	immune system process	lipid metabolic process	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

61
Tissues

24
cDNA Data

74
Literature Summary

3

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase crlf3

ZFIN crlf3

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Crlf3 interacts with 162 markers (Mir7-1, Mir9-1, Mir9-2, ...) View All

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All Sequences

54
RefSeq

5
UniProt

4
CCDS

CCDS25126.1, CCDS70260.1
UniGene

272093

			Length	Strain/Species	Flank
genomic	OTTMUSG00000000187	VEGA Gene Model \| MGI Sequence Detail	34499	C57BL/6J	± kb
transcript	OTTMUST00000000558	VEGA \| MGI Sequence Detail	2396	Not Applicable
polypeptide	OTTMUSP00000000242	VEGA \| MGI Sequence Detail	442	Not Applicable

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SNPs within 2kb

130 from dbSNP Build 142

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UniProt

4 Sequences
Protein Ontology

PR:000005887 cytokine receptor-like factor 3

(term hierarchy)
InterPro Domains

IPR003961 Fibronectin type III

IPR013783 Immunoglobulin-like fold

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All nucleic 75

cDNA 75

Microarray probesets 3

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MGI:2144610

Summaries

All 48

Developmental Gene Expression 3

Gene Ontology 1

Phenotypes 24
Earliest

J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
Latest

J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources Funding Information Warranty Disclaimer & Copyright Notice Send questions and comments to User Support.	last database update 08/08/2017 MGI 6.10