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Hif3a Gene Detail
Summary
  • Symbol
    Hif3a
  • Name
    hypoxia inducible factor 3, alpha subunit
  • Synonyms
    bHLHe17, MOP7, Nepas
  • Feature Type
    protein coding gene
  • IDs
    MGI:1859778
    NCBI Gene: 53417
  • Gene Overview
    MyGene.info: HIF3A
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:17031507-17062427 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 9.15 cM, cytoband A2
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    313 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1859778
protein coding gene Chr7:17030993-17062427 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031728
protein coding gene Chr7:14809320-14844258 (-)
A/J MGP_AJ_G0031700
protein coding gene Chr7:14512661-14544956 (-)
AKR/J MGP_AKRJ_G0031625
protein coding gene Chr7:14857922-14889512 (-)
BALB/cJ MGP_BALBcJ_G0031707
protein coding gene Chr7:14625617-14659257 (-)
C3H/HeJ MGP_C3HHeJ_G0031429
protein coding gene Chr7:15046484-15082639 (-)
C57BL/6NJ MGP_C57BL6NJ_G0032173
protein coding gene Chr7:15534479-15565514 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0029252
protein coding gene Chr7:16063016-16093267 (-)
CAST/EiJ MGP_CASTEiJ_G0030780
protein coding gene Chr7:11824339-11859789 (-)
CBA/J MGP_CBAJ_G0031388
protein coding gene Chr7:16067359-16110214 (-)
DBA/2J MGP_DBA2J_G0031544
protein coding gene Chr7:14410579-14441829 (-)
FVB/NJ MGP_FVBNJ_G0031500
protein coding gene Chr7:14309102-14341431 (-)
LP/J MGP_LPJ_G0031629
protein coding gene Chr7:15053522-15097556 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0031535
protein coding gene Chr7:15979153-16014959 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0032202
protein coding gene Chr7:14643617-14689715 (-)
PWK/PhJ MGP_PWKPhJ_G0030504
protein coding gene Chr7:11929616-11966510 (-)
SPRET/EiJ MGP_SPRETEiJ_G0030331
protein coding gene Chr7:9570411-9604833 (-)
WSB/EiJ MGP_WSBEiJ_G0030877
protein coding gene Chr7:14706706-14746369 (-)



Homology
more
  • Human Ortholog
    HIF3A, hypoxia inducible factor 3 subunit alpha
  • Vertebrate Orthologs
    8
  • Human Ortholog
    HIF3A, hypoxia inducible factor 3 subunit alpha
    Orthology source: HomoloGene, HGNC
  • Synonyms
    bHLHe17, HIF-3A, HIF3-alpha-1, IPAS, MOP7, PASD7
  • Links
    NCBI Gene ID: 64344
    neXtProt AC: NX_Q9Y2N7
    UniProt: Q9Y2N7

  • Chr Location
    19q13.32; chr19:46297046-46343433 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotypes from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele display impaired lung remodeling resulting in hypertrophy of the heart right ventricle and pulmonary hyperplasia.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000004328 Ensembl Gene Model | MGI Sequence Detail 30921 C57BL/6J ±  kb
    transcript ENSMUST00000108492 Ensembl | MGI Sequence Detail 6402 Not Applicable  
    polypeptide ENSMUSP00000104132 Ensembl | MGI Sequence Detail 664 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 33
      cDNA 30
      Primer pair 2
      Other 1

      Microarray probesets 6
    References
    more
    • Summaries
      All 44
      Developmental Gene Expression 13
      Gene Ontology 8
      Phenotypes 5
    • Earliest
      J:62516 Gu YZ, et al., Molecular characterization and chromosomal localization of a third alpha-class hypoxia inducible factor subunit, HIF3alpha. Gene Expr. 1998;7(3):205-13
    • Latest
      J:263769 Amin FZ, et al., Deterioration of alveolar development in mice with both HIF-3alpha knockout and HIF-2alpha knockdown. BMC Res Notes. 2018 Jul 9;11(1):449

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory