Ramp2 MGI Mouse Gene Detail - MGI:1859650 - receptor (calcitonin) activity modifying protein 2

Symbol

Ramp2
Name

receptor (calcitonin) activity modifying protein 2

Feature Type

protein coding gene
IDs

MGI:1859650
NCBI Gene: 54409
Gene Overview

MyGene.info: RAMP2
Alliance

gene page
Transcription Start Sites

8 TSS

Sequence Map

Chr11:101246334-101248250 bp, + strand
From NCBI annotation of GRCm38

View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 11, 64.47 cM
Mapping Data

2 experiments

SNPs within 2kb

10 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1859650	protein coding gene	Chr11:101246028-101259546 (.)
129S1/SvImJ	MGP_129S1SvImJ_G0019188	protein coding gene	Chr11:104086845-104102691 (+)
A/J	MGP_AJ_G0019156	protein coding gene	Chr11:99712120-99726626 (+)
AKR/J	MGP_AKRJ_G0019125	protein coding gene	Chr11:102810314-102823733 (+)
BALB/cJ	MGP_BALBcJ_G0019130	protein coding gene	Chr11:100199482-100213011 (+)
C3H/HeJ	MGP_C3HHeJ_G0018939	protein coding gene	Chr11:102982766-102997776 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0019579	protein coding gene	Chr11:107317115-107338132 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0017205	protein coding gene	Chr11:97127199-97140086 (+)
CAST/EiJ	MGP_CASTEiJ_G0018493	protein coding gene	Chr11:103971281-103986605 (+)
CBA/J	MGP_CBAJ_G0018908	protein coding gene	Chr11:111765470-111780623 (+)
DBA/2J	MGP_DBA2J_G0019020	protein coding gene	Chr11:99239687-99253559 (+)
FVB/NJ	MGP_FVBNJ_G0019010	protein coding gene	Chr11:98786982-98800307 (+)
LP/J	MGP_LPJ_G0019089	protein coding gene	Chr11:104628526-104647649 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0019041	protein coding gene	Chr11:111331017-111346305 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0019617	protein coding gene	Chr11:103134132-103153344 (+)
PWK/PhJ	MGP_PWKPhJ_G0018256	protein coding gene	Chr11:100296112-100309726 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0018048	protein coding gene	Chr11:102877179-102890584 (+)
WSB/EiJ	MGP_WSBEiJ_G0018542	protein coding gene	Chr11:103133169-103146380 (+)

Human Ortholog

RAMP2, receptor activity modifying protein 2

Vertebrate Orthologs

8

Human Ortholog

RAMP2, receptor activity modifying protein 2
Orthology source: HGNC, HomoloGene
Links

HGNC:9844

NCBI Gene ID: 10266

neXtProt AC: NX_O60895

UniProt: O60895
Chr Location

17q21.2; chr17:42761194-42763041 (+) GRCh38.p7

HomoloGene

Vertebrate Homology Class 4274
1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 macaque, rhesus
HCOP

human homology predictions: RAMP2
Gene Tree

Ramp2

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Phenotype Summary

24 phenotypes from 2 alleles in 3 genetic backgrounds
4 images
20 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	immune system	integument	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	neoplasm	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	vision/eye

Click cells to view annotations.

All Mutations and Alleles

7
Gene trapped

1
Targeted

6
Genomic Mutations

1 involving Ramp2
Incidental Mutations

APF
Find Mice (IMSR)

7 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

Mice homozygous for a null allele exhibit embryonic lethality. Mice heterozygous for the null allele exhibit decreased litter size beyond the loss of homozygous embryos.

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All GO Annotations

68
GO References

8

External Resources

FuncBase

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell death	cell differentiation	cell population proliferation	cellular component organization	establishment of localization	homeostatic process	immune system process	lipid metabolic process	nucleic acid-templated transcription	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

31
Tissues

23
cDNA Data

12
Literature Summary

8

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

GEISHA RAMP2

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Ramp2 interacts with 217 markers (Mir10a, Mir10b, Mir15a, ...) View All

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All Sequences

54
RefSeq

2
UniProt

6
CCDS

CCDS25457.1

Ensembl

ENSMUSG00000001240 (Evidence)
NCBI Gene

54409

			Length	Strain/Species	Flank
genomic	54409	NCBI Gene Model \| MGI Sequence Detail	1917	C57BL/6J	± kb
transcript	NM_019444	RefSeq \| MGI Sequence Detail	872	C57BL/6
polypeptide	Q9WUP0	UniProt \| EBI \| MGI Sequence Detail	189	Not Applicable

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UniProt

6 Sequences
Protein Ontology

PR:000013706 receptor activity-modifying protein 2

(term hierarchy)
InterPro Domains

IPR038126 RAMP domain superfamily

IPR006985 Receptor activity modifying protein

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All nucleic 18

cDNA 16

Primer pair 1

Other 1

Microarray probesets 6

Summaries

All 56

Developmental Gene Expression 8

Gene Ontology 8

Phenotypes 20
Earliest

J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
Latest

J:265992 Mackie DI, et al., hCALCRL mutation causes autosomal recessive nonimmune hydrops fetalis with lymphatic dysplasia. J Exp Med. 2018 Sep 3;215(9):2339-2353

TSS for Ramp2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105054	Chr11:101245996-101246044 (+)	-314 bp
Tssr105055	Chr11:101246047-101246058 (+)	-281 bp
Tssr105056	Chr11:101246063-101246068 (+)	-268 bp
Tssr105060	Chr11:101246383-101246391 (+)	53 bp
Tssr105061	Chr11:101246405-101246422 (+)	80 bp
Tssr105062	Chr11:101246924-101246935 (+)	596 bp
Tssr3675	Chr11:101246937-101246957 (+)	613 bp
Tssr105063	Chr11:101246960-101246981 (+)	637 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources Funding Information Warranty Disclaimer & Copyright Notice Send questions and comments to User Support.	last database update 12/04/2018 MGI 6.13