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Smgc Gene Detail
Summary
  • Symbol
    Smgc
  • Name
    submandibular gland protein C
  • Synonyms
    2310010P21Rik, DXImx49e, Sfc21
  • Feature Type
    protein coding gene
  • IDs
    MGI:1859618
    NCBI Gene: 223809
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:91838328-91861435 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 15, 46.14 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    144 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1859618
protein coding gene Chr15:91838265-91861438 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022250
protein coding gene Chr15:93176283-93204665 (+)
A/J MGP_AJ_G0022209
protein coding gene Chr15:89572209-89600879 (+)
AKR/J MGP_AKRJ_G0022184
protein coding gene Chr15:92222621-92257998 (+)
BALB/cJ MGP_BALBcJ_G0022215
protein coding gene Chr15:89694780-89724409 (+)
C3H/HeJ MGP_C3HHeJ_G0021985
protein coding gene Chr15:92250788-92281030 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022660
protein coding gene Chr15:96571239-96594760 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020186
protein coding gene Chr15:85696872-85716431 (+)
CAST/EiJ MGP_CASTEiJ_G0021507
protein coding gene Chr15:93056689-93081155 (+)
CBA/J MGP_CBAJ_G0021952
protein coding gene Chr15:99821148-99850545 (+)
DBA/2J MGP_DBA2J_G0022079
protein coding gene Chr15:89007519-89040671 (+)
FVB/NJ MGP_FVBNJ_G0022058
protein coding gene Chr15:88049897-88077064 (+)
LP/J MGP_LPJ_G0022150
protein coding gene Chr15:93305149-93350809 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022078
protein coding gene Chr15:104190205-104236706 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022675
protein coding gene Chr15:92340597-92367697 (+)
PWK/PhJ MGP_PWKPhJ_G0021248
protein coding gene Chr15:89076718-89096394 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021082
protein coding gene Chr15:92070480-92101744 (+)
WSB/EiJ MGP_WSBEiJ_G0021556
protein coding gene Chr15:92792826-92825254 (+)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    22 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 223809 NCBI Gene Model | MGI Sequence Detail 23108 C57BL/6J ±  kb
transcript NM_198927 RefSeq | MGI Sequence Detail 2977 C57BL/6  
polypeptide Q6JHY2 UniProt | EBI | MGI Sequence Detail 733 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    9 Sequences
Molecular
Reagents
less
  • All nucleic 15
    Genomic 2
    cDNA 10
    Primer pair 3

    Microarray probesets 4
Other
Accession IDs
less
MGI:1916839
References
more
  • Summaries
    All 46
    Developmental Gene Expression 3
    Diseases 1
    Gene Ontology 1
    Phenotypes 22
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:233611 Hirata A, et al., Homeobox family Hoxc localization during murine palate formation. Congenit Anom (Kyoto). 2016 Jul;56(4):172-9

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
10/08/2019
MGI 6.14
The Jackson Laboratory