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Praf2
Gene Detail
Symbol

Name
ID
Praf2
PRA1 domain family 2
MGI:1859607
Synonyms
DXImx39e, JM4, Sfc20
Feature Type
protein coding gene
Genetic Map
Chromosome X
3.48 cM
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
ChrX:7728439-7731064 bp, + strand
From VEGA annotation of GRCm38

  2626 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:21412  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 zebrafish

HCOP human homology predictions: PRAF2
Gene Tree: Praf2

Human
homologs
PRAF2, PRA1 domain family, member 2
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 11230
neXtProt AC: NX_O60831

Human Synonyms: JM4

Human Chr (Location): Xp11.23; chrX:49071156-49074045 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(13) : Gene trapped(10) Targeted(3)
Interactions
Praf2 interacts with 87 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process protein transport, transport
Component endosome, integral component of membrane, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (19)    Tissues (3)    Images (14)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 19
cDNA source data(44)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: ZFIN praf2    NEW 
Molecular
reagents
All nucleic(49) Genomic(5) cDNA(44)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000017807 (Evidence)
Ensembl Gene Model ENSMUSG00000031149 (Evidence)
Entrez Gene 54637 (Evidence)
UniGene 28850
DFCI TC1577686
DoTS DT.492460, DT.94400012
NIA Mouse Gene Index U170343, U123187
Consensus CDS Project CCDS29971.1
International Mouse Phenotyping Consortium Status Praf2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000017807 VEGA Gene Model | MGI Sequence Detail 2626 C57BL/6J ±  kb
transcript OTTMUST00000043124 VEGA | MGI Sequence Detail 1339 Not Applicable 
polypeptide OTTMUSP00000019397 VEGA | MGI Sequence Detail 178 Not Applicable 

For the selected sequences
All sequences(23) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(17 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR004895 Prenylated rab acceptor PRA1
Protein Ontology PR:000013168 PRA1 family protein 2
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(39)
Other
accession IDs
MGI:2140183, MGI:2148054

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
06/30/2015
MGI 5.22
The Jackson Laboratory