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Praf2
Gene Detail
 Symbol
Name
ID
Praf2
PRA1 domain family 2
MGI:1859607
Synonyms DXImx39e, JM4, Sfc20
Feature Type protein coding gene
Genetic Map
Chromosome X
3.48 cM
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
ChrX:7728439-7731064 bp, + strand
From VEGA annotation of GRCm38

  2626 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:21412  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 cattle; 1 dog; 1 zebrafish

Gene Tree: Praf2

Human
homologs
Human Homolog PRAF2, PRA1 domain family, member 2
NCBI Gene ID 11230
neXtProt AC  NX_O60831
Human Chr (Location)  Xp11.23; chrX:49071156-49074045 (-)  GRCh38
Alleles
and
phenotypes
All alleles(13) : Targeted(3) Gene trapped(10)
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process protein transport, transport
Component endosome, integral component of membrane, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (19)    Tissues (3)    Images (14)
Theiler Stages: 23
Assay TypeResults
RNA in situ 19
cDNA source data(44)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(49) Genomic(5) cDNA(44)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000017807 (Evidence)
Ensembl Gene ModelENSMUSG00000031149 (Evidence)
Entrez Gene54637 (Evidence)
UniGene28850
DFCITC1577686
DoTSDT.492460, DT.94400012
NIA Mouse Gene IndexU123187, U170343
Consensus CDS ProjectCCDS29971.1
International Mouse Knockout Project StatusPraf2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000017807 VEGA Gene Model | MGI Sequence Detail 2626 C57BL/6J ±  kb
transcript OTTMUST00000043124 VEGA | MGI Sequence Detail 1339 Not Applicable 
polypeptide OTTMUSP00000019397 VEGA | MGI Sequence Detail 178 Not Applicable 

For the selected sequences
All sequences(23) RefSeq(2) UniProt(1)
Polymorphisms SNPs within 2kb(17 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR004895 Prenylated rab acceptor PRA1
Protein Ontology PR:000013168 PRA1 family protein 2
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(38)
Other
accession IDs
MGI:2140183, MGI:2148054

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory