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Rps28
Gene Detail
 Symbol
Name
ID
Rps28
ribosomal protein S28
MGI:1859516
Feature Type protein coding gene
Genetic Map
Chromosome 17
17.98 cM
Detailed Genetic Map ± 1 cM


Mapping data(1)
Sequence Map
Chr17:33819027-33824562 bp, - strand
From VEGA annotation of GRCm38

  5536 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:68150  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: ribosomal protein, S2a/S28e types
Gene Tree: Rps28

Human
homologs
Human Homolog RPS28, ribosomal protein S28
NCBI Gene ID 6234
neXtProt AC  NX_P62857
Human Synonyms  S28
Human Chr (Location)  19p13.2; chr19:8321500-8322396 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(46) : Gene trapped(45) Targeted(1)
 
Mice homozygous for a gene trap allele are viable and fertile.
 
Interactions
Rps28 interacts with 27 markers (Mir34a, Mir130b, Mir133b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (16 annotations)
Process ribosomal small subunit biogenesis, rRNA export from nucleus, ...
Component cytoplasm, cytosolic small ribosomal subunit, ...
Function poly(A) RNA binding, structural constituent of ribosome
This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase
Expression
Literature Summary: (3 records)
Data Summary: Results (27)    Tissues (21)   
Theiler Stages: 9, 13, 16, 17, 20, 23, 28
Assay TypeResults
In situ reporter (knock in) 18
RT-PCR 9
cDNA source data(2)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(4) cDNA(3) Primer pair(1)
Microarray probesets(11)
Other database
links
VEGA Gene ModelOTTMUSG00000037209 (Evidence)
Ensembl Gene ModelENSMUSG00000067288 (Evidence)
Entrez Gene54127 (Evidence)
DoTSDT.91587251, DT.94222705
NIA Mouse Gene IndexU014996, U037693, U044952, U051298, U063264, U067715, U102435, U350552
Consensus CDS ProjectCCDS37571.1
International Mouse Knockout Project StatusRps28
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000037209 VEGA Gene Model | MGI Sequence Detail 5536 C57BL/6J ±  kb
transcript OTTMUST00000095945 VEGA | MGI Sequence Detail 382 Not Applicable 
polypeptide OTTMUSP00000053568 VEGA | MGI Sequence Detail 69 Not Applicable 

For the selected sequences
All sequences(58) RefSeq(10) UniProt(3)
Polymorphisms SNPs within 2kb(63 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR012340 Nucleic acid-binding, OB-fold
InterPro IPR000289 Ribosomal protein S28e
Protein Ontology PR:000014273 40S ribosomal protein S28
References (Earliest) J:29553 Hassouna N, et al., The complete nucleotide sequence of mouse 28S rRNA gene. Implications for the process of size increase of the large subunit rRNA in higher eukaryotes. Nucleic Acids Res. 1984 Apr 25;12(8):3563-83
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(35)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/23/2014
MGI 5.19
The Jackson Laboratory