About   Help   FAQ
Atxn10
Gene Detail
Symbol

Name
ID
Atxn10
ataxin 10
MGI:1859293
Synonyms
E46, Sca10, TEG-169, Tex169
Feature Type
protein coding gene
Genetic Map
Chromosome 15
40.32 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr15:85336381-85463836 bp, + strand
From NCBI annotation of GRCm38

  127456 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:40858  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: ATXN10
Gene Tree: Atxn10

Human
homologs
ATXN10, ataxin 10
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 25814
neXtProt AC: NX_Q9UBB4

Human Synonyms: E46L, HUMEEP, SCA10

Human Chr (Location): 22q13.31; chr22:45671798-45845307 (+)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human ATXN10

Mutations,
alleles, and
phenotypes
All mutations/alleles(27) : Gene trapped(20) Radiation induced(1) Targeted(6)
Genomic Mutations involving Atxn10 (1)
Incidental mutations (data from Mutagenetix , APF )
Phenotype Images(2)
Interactions
Atxn10 interacts with 145 markers (Mir1a-1, Mir1a-2, Mir9-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (15 annotations)
Process nervous system development, neuron projection development, ...
Component cytoplasm, cytosol, ...
Function enzyme binding, identical protein binding, ...
This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (29)    Tissues (29)    Images (8)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 29
cDNA source data(21)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase atxn10    NEW 
Molecular
reagents
All nucleic(22) cDNA(22)
Microarray probesets(7)
Other database
links
Ensembl Gene Model ENSMUSG00000016541 (Evidence)
Entrez Gene 54138 (Evidence)
DFCI TC1629329, TC1573101, TC1584723
DoTS DT.101179375, DT.110829053, DT.55256405, DT.536939, DT.111169931, DT.94249838
NIA Mouse Gene Index U043467
Consensus CDS Project CCDS37170.1
International Mouse Phenotyping Consortium Status Atxn10
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 54138 NCBI Gene Model | MGI Sequence Detail 127456 C57BL/6J ±  kb
transcript NM_016843 RefSeq | MGI Sequence Detail 2425 C57BL/6 
polypeptide P28658 UniProt | EBI | MGI Sequence Detail 475 Not Applicable 

For the selected sequences
All sequences(52) RefSeq(2) UniProt(6)
Polymorphisms
SNPs within 2kb(726 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR011989 Armadillo-like helical
InterPro IPR016024 Armadillo-type fold
InterPro IPR019156 Ataxin-10 domain
Protein Ontology PR:000004504 ataxin-10
Graphical View of Protein Domain Structure
References
(Earliest) J:35463 Lopez-Fernandez LA, et al., Characterization of genes expressed early in mouse spermatogenesis, isolated from a subtractive cDNA library. Mamm Genome. 1996 Sep;7(9):698-700
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(41)
Other
accession IDs
MGI:1096568, MGI:2145984, MGI:2146273

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
06/23/2015
MGI 5.22
The Jackson Laboratory