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Cldn6
Gene Detail
Symbol

Name
ID
Cldn6
claudin 6
MGI:1859284
Feature Type
protein coding gene
Genetic Map
Chromosome 17
11.99 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr17:23679365-23682446 bp, + strand
From VEGA annotation of GRCm38

  3082 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:10300  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 2 western clawed frog; 2 zebrafish

HCOP human homology predictions: CLDN6
Gene Tree: Cldn6

Human
homologs
CLDN6, claudin 6
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 9074
neXtProt AC: NX_P56747

Human Chr (Location): 16p13.3; chr16:3014712-3018187 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(3) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for a null allele do not exhibit overt abnormalities.
 
Phenotype Images(3)
Interactions
Cldn6 interacts with 112 markers (Mir15a, Mir15b, Mir16-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process cell-cell junction organization
Component bicellular tight junction, cell junction, ...
Function protein binding, structural molecule activity
External Resources: FuncBase
Expression
Literature Summary: (20 records)
Data Summary: Results (163)    Tissues (138)    Images (40)    Tissue x Stage Matrix (view)
Assay TypeResults
Immunohistochemistry 19
RNA in situ 118
Western blot 1
RT-PCR 25
cDNA source data(45)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase cldn6.1, LOC100493413    NEW 
Molecular
reagents
All nucleic(49) cDNA(45) Primer pair(2) Other(2)
Microarray probesets(5)
Other database
links
VEGA Gene Model OTTMUSG00000033036 (Evidence)
Ensembl Gene Model ENSMUSG00000023906 (Evidence)
Entrez Gene 54419 (Evidence)
UniGene 86421
DFCI TC1580046
DoTS DT.531329, DT.55212758, DT.94028242
NIA Mouse Gene Index U017617
Consensus CDS Project CCDS28457.1
International Mouse Phenotyping Consortium Status Cldn6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000033036 VEGA Gene Model | MGI Sequence Detail 3082 C57BL/6J ±  kb
transcript OTTMUST00000082451 VEGA | MGI Sequence Detail 1506 Not Applicable 
polypeptide OTTMUSP00000044180 VEGA | MGI Sequence Detail 219 Not Applicable 

For the selected sequences
All sequences(34) RefSeq(4) UniProt(3)
Polymorphisms
SNPs within 2kb(14 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR006187 Claudin
InterPro IPR003925 Claudin-6
InterPro IPR017974 Claudin, conserved site
InterPro IPR004031 PMP-22/EMP/MP20/Claudin superfamily
Protein Ontology PR:000005554 claudin-6
References
(Earliest) J:58914 Itoh M, et al., Direct binding of three tight junction-associated MAGUKs, ZO-1, ZO-2, and ZO-3, with the COOH termini of claudins. J Cell Biol. 1999 Dec 13;147(6):1351-63
(Latest) J:208419 Basta JM, et al., Sall1 balances self-renewal and differentiation of renal progenitor cells. Development. 2014 Mar;141(5):1047-58
All references(60)
Other
accession IDs
MGI:2146955

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory