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Cacng6
Gene Detail
 Symbol
Name
ID
Cacng6
calcium channel, voltage-dependent, gamma subunit 6
MGI:1859168
Synonyms 2310033H20Rik
Feature Type protein coding gene
Genetic Map
Chromosome 7
2.00 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr7:3424195-3435667 bp, + strand
From VEGA annotation of GRCm38

  11473 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:15427  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 2 zebrafish

Gene Tree: Cacng6

Human
homologs
Human Homolog CACNG6, calcium channel, voltage-dependent, gamma subunit 6
NCBI Gene ID 59285
neXtProt AC  NX_Q9BXT2
Human Chr (Location)  19q13.4; chr19:53991149-54012666 (+)  GRCh38
Alleles
and
phenotypes
All alleles(6) : Gene trapped(5) Targeted(1)
Incidental mutations (data from Mutagenetix , APF )
 
Mice homozygous for disruptions in this gene display a normal phenotype.
 
Gene Ontology
(GO)
classifications
All GO classifications: (12 annotations)
Process calcium ion transmembrane transport, calcium ion transport, ...
Component integral component of membrane, membrane
Function calcium channel activity, voltage-gated ion channel activity
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (46)    Tissues (31)    Images (13)
Theiler Stages: 19, 23, 25, 28
Assay TypeResults
RNA in situ 43
RT-PCR 3
cDNA source data(5)
External Resources: GEO   ArrayExpress
Molecular
reagents
All nucleic(6) cDNA(5) Primer pair(1)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000044342 (Evidence)
Ensembl Gene ModelENSMUSG00000078815 (Evidence)
Entrez Gene54378 (Evidence)
DFCITC1655135
DoTSDT.487384
NIA Mouse Gene IndexU336049, U371540
Consensus CDS ProjectCCDS39726.1
International Mouse Knockout Project StatusCacng6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000044342 VEGA Gene Model | MGI Sequence Detail 11473 C57BL/6J ±  kb
transcript OTTMUST00000116698 VEGA | MGI Sequence Detail 1977 Not Applicable 
polypeptide OTTMUSP00000065062 VEGA | MGI Sequence Detail 260 Not Applicable 

For the selected sequences
All sequences(30) RefSeq(6) UniProt(3)
Polymorphisms SNPs within 2kb(116 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR004031 PMP-22/EMP/MP20/Claudin
InterPro IPR008370 Voltage-dependent calcium channel, gamma-6 subunit
InterPro IPR008368 Voltage-dependent calcium channel, gamma subunit
Protein Ontology PR:000004955 voltage-dependent calcium channel gamma-6 subunit
References (Earliest) J:61323 Klugbauer N, et al., A family of gamma-like calcium channel subunits. FEBS Lett. 2000 Mar 24;470(2):189-97
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(31)
Other
accession IDs
MGI:1916809, MGI:2142197

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory