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Cacng6
Gene Detail
Symbol

Name
ID
Cacng6
calcium channel, voltage-dependent, gamma subunit 6
MGI:1859168
Synonyms
2310033H20Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 7
2.00 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr7:3424195-3435667 bp, + strand
From VEGA annotation of GRCm38

  11473 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:15427  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 western clawed frog; 2 zebrafish

HCOP human homology predictions: CACNG6
Gene Tree: Cacng6

Human
homologs
CACNG6, calcium channel, voltage-dependent, gamma subunit 6
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 59285
neXtProt AC: NX_Q9BXT2

Human Chr (Location): 19q13.4; chr19:53991149-54012666 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(5) Targeted(1)
Incidental mutations (data from Mutagenetix , APF , CvDC )
 
Mice homozygous for disruptions in this gene display a normal phenotype.
 
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (2 records)
Data Summary: Results (46)    Tissues (32)    Images (13)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 43
RT-PCR 3
cDNA source data(5)
Other mouse links: GEO   Expression Atlas
Other vertebrate links: Xenbase cacng6    NEW 
Molecular
reagents
All nucleic(6) cDNA(5) Primer pair(1)
Microarray probesets(2)
Other database
links
VEGA Gene Model OTTMUSG00000044342 (Evidence)
Ensembl Gene Model ENSMUSG00000078815 (Evidence)
Entrez Gene 54378 (Evidence)
DFCI TC1655135
DoTS DT.487384
NIA Mouse Gene Index U371540, U336049
Consensus CDS Project CCDS39726.1
International Mouse Phenotyping Consortium Status Cacng6
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000044342 VEGA Gene Model | MGI Sequence Detail 11473 C57BL/6J ±  kb
transcript OTTMUST00000116698 VEGA | MGI Sequence Detail 1977 Not Applicable 
polypeptide OTTMUSP00000065062 VEGA | MGI Sequence Detail 260 Not Applicable 

For the selected sequences
All sequences(31) RefSeq(6) UniProt(4)
Polymorphisms
SNPs within 2kb(116 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR004031 PMP-22/EMP/MP20/Claudin
InterPro IPR008370 Voltage-dependent calcium channel, gamma-6 subunit
InterPro IPR008368 Voltage-dependent calcium channel, gamma subunit
Protein Ontology PR:000004955 voltage-dependent calcium channel gamma-6 subunit
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(28)
Other
accession IDs
MGI:1916809, MGI:2142197

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
06/23/2015
MGI 5.22
The Jackson Laboratory