Cacng6
Gene Detail

Symbol Name ID

Cacng6 calcium channel, voltage-dependent, gamma subunit 6 MGI:1859168

Synonyms

2310033H20Rik

Feature Type

protein coding gene

Genetic Map

Chromosome 7

2.00 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr7:3424662-3434940 bp, + strand From NCBI annotation of GRCm38   10279 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Mammalian homology

human; rat; cattle; chimpanzee; dog, domestic    (Mammalian Orthology)
Comparative Map (Mouse/Human Cacng6 ± 2 cM)

Gene Tree: Cacng6

Human ortholog

CACNG6 calcium channel, voltage-dependent, gamma subunit 6 NCBI Gene ID 59285
Human Chr19:54495542-54515920 bp, + strand Reference GRCh37.p2 Primary Assembly

Alleles and phenotypes

All alleles(5) : Gene trapped(5)
 

Mice homozygous for disruptions in this gene display a normal phenotype.

 

Gene Ontology (GO) classifications

All GO classifications: (12 annotations)

Process	calcium ion transmembrane transport, calcium ion transport, ...
Component	integral to membrane, membrane
Function	calcium channel activity, ion channel activity, ...

External Resources: FuncBase

Expression

Literature Summary: (2 records)
Data Summary: Results (46)    Tissues (31)    Images (13)
Theiler Stages: 19, 23, 25, 28

Assay Type	Results
RNA in situ	43
RT-PCR	3

cDNA source data(5)
External Resources: GEO   ArrayExpress

Molecular reagents

All nucleic(6) cDNA(5) Primer pair(1)
Microarray probesets(2)

Other database links

Ensembl Gene Model	ENSMUSG00000078815 (Evidence)
Entrez Gene	54378 (Evidence)
DFCI	TC1655135
DoTS	DT.487384
NIA Mouse Gene Index	U336049, U371540
Consensus CDS Project	CCDS39726.1
International Mouse Knockout Project Status	Cacng6

Sequences

Length	Strain/Species
genomic	54378	NCBI Gene Model | MGI Sequence Detail	10279	C57BL/6J
transcript	NM_133183	RefSeq | MGI Sequence Detail	783	BALB/c
polypeptide	Q8VHW3	UniProt | EBI | MGI Sequence Detail	260	Not Applicable

All sequences(19) RefSeq(2) UniProt(3)

Polymorphisms

SNPs(43 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR008370	Voltage-dependent calcium channel, gamma-6 subunit
InterPro	IPR008368	Voltage-dependent calcium channel, gamma subunit
Protein Ontology	PR:000004955	voltage-dependent calcium channel gamma-6 subunit

Graphical View of Protein Domain Structure

References

(Earliest) J:61323 Klugbauer N, et al., A family of gamma-like calcium channel subunits. FEBS Lett. 2000 Mar 24;470(2):189-97
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(29)

Other accession IDs

MGI:1916809, MGI:2142197