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Cacng4
Gene Detail
Symbol

Name
ID
Cacng4
calcium channel, voltage-dependent, gamma subunit 4
MGI:1859167
Feature Type
protein coding gene
Genetic Map
Chromosome 11
70.29 cM, cytoband E1
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr11:107732357-107794557 bp, - strand
From VEGA annotation of GRCm38

  62201 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:8674  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 2 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Cacng4

Human
homologs
Human Homolog CACNG4, calcium channel, voltage-dependent, gamma subunit 4
NCBI Gene ID 27092
neXtProt AC  NX_Q9UBN1
Human Chr (Location)  17q24; chr17:66964864-67033402 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Targeted(4)
 
Homozygous mutant mice are viable, fertile and phenotypically normal with no ataxic gait or absence seizures.
 
Interactions
Cacng4 interacts with 231 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Expression
Literature Summary: (5 records)
Data Summary: Results (346)    Tissues (124)    Images (91)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 205
In situ reporter (knock in) 90
Northern blot 3
RT-PCR 48
cDNA source data(5)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(10) Genomic(1) cDNA(6) Primer pair(3)
Microarray probesets(2)
Other database
links
VEGA Gene ModelOTTMUSG00000003107 (Evidence)
Ensembl Gene ModelENSMUSG00000020723 (Evidence)
Entrez Gene54377 (Evidence)
DFCITC1602301, TC1639489
DoTSDT.101146564, DT.101718586, DT.87068544
NIA Mouse Gene IndexU033561
Consensus CDS ProjectCCDS25571.1
International Mouse Knockout Project StatusCacng4
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000003107 VEGA Gene Model | MGI Sequence Detail 62201 C57BL/6J ±  kb
transcript OTTMUST00000006397 VEGA | MGI Sequence Detail 3500 Not Applicable 
polypeptide OTTMUSP00000003012 VEGA | MGI Sequence Detail 327 Not Applicable 

For the selected sequences
All sequences(27) RefSeq(2) UniProt(3)
Polymorphisms
SNPs within 2kb(379 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR004031 PMP-22/EMP/MP20/Claudin
InterPro IPR005423 Voltage-dependent calcium channel, gamma-4 subunit
InterPro IPR008368 Voltage-dependent calcium channel, gamma subunit
Protein Ontology PR:000004953 voltage-dependent calcium channel gamma-4 subunit
References
(Earliest) J:61749 Burgess DL, et al., Identification of three novel Ca(2+) channel gamma subunit genes reveals molecular diversification by tandem and chromosome duplication. Genome Res. 1999 Dec;9(12):1204-13
(Latest) J:188364 Schwenk J, et al., High-resolution proteomics unravel architecture and molecular diversity of native AMPA receptor complexes. Neuron. 2012 May 24;74(4):621-33
All references(38)
Other
accession IDs
MGI:2144142, MGI:2144541

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory