Vamp4
Gene Detail

Symbol Name ID

Vamp4 vesicle-associated membrane protein 4 MGI:1858730

Synonyms

D1Ertd147e

Feature Type

protein coding gene

Genetic Map

Chromosome 1

70.29 cM, cytoband H1
Detailed Genetic Map ± 1 cM


Mapping data(4)

Sequence Map

Chr1:162570515-162599084 bp, + strand From VEGA annotation of GRCm38   28570 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:37847  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: synaptobrevin
Gene Tree: Vamp4

Human homologs

Human Homolog		VAMP4, vesicle-associated membrane protein 4
NCBI Gene ID		8674
neXtProt AC		NX_O75379
Human Synonyms		VAMP24, VAMP-4
Human Chr (Location)		1q24-q25; chr1:171669296-171711379 (-)  GRCh37.p10

Alleles and phenotypes

All alleles(10) : Gene trapped(10)

Gene Ontology (GO) classifications

All GO classifications: (10 annotations)

Process	Golgi to plasma membrane protein transport, regulation of Golgi to plasma membrane protein transport, ...
Component	Golgi apparatus, integral to membrane, ...
Function	molecular_function

External Resources: FuncBase

Expression

Literature Summary: (2 records)
Data Summary: Results (2)    Tissues (2)    Images (2)
Theiler Stages: 21

Assay Type	Results
Immunohistochemistry	2

cDNA source data(12)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(13) cDNA(12) Primer pair(1)
Microarray probesets(7)

Other database links

VEGA Gene Model	OTTMUSG00000033107 (Evidence)
Ensembl Gene Model	ENSMUSG00000026696 (Evidence)
Entrez Gene	53330 (Evidence)
DFCI	TC1579600, TC1583008, TC1605359
DoTS	DT.481843, DT.530798
PDB	2NPS
Consensus CDS Project	CCDS15421.1
International Mouse Knockout Project Status	Vamp4

Sequences

Length	Strain/Species
genomic	OTTMUSG00000033107	VEGA Gene Model | MGI Sequence Detail	28570	C57BL/6J
transcript	OTTMUST00000082752	VEGA | MGI Sequence Detail	2752	Not Applicable
polypeptide	OTTMUSP00000044395	VEGA | MGI Sequence Detail	141	Not Applicable

All sequences(50) RefSeq(2) UniProt(2)

Polymorphisms

SNPs(129 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR001388	Synaptobrevin
InterPro	IPR016444	Synaptobrevin, metazoa/fungi
Protein Ontology	PR:000017251	vesicle-associated membrane protein 4

References

(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(40)

Other accession IDs

MGI:1098701