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Vamp4 Gene Detail
Summary
  • Symbol
    Vamp4
  • Name
    vesicle-associated membrane protein 4
  • Synonyms
    D1Ertd147e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1858730
    NCBI Gene: 53330
  • Gene Overview
    MyGene.info: VAMP4
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:162570515-162599084 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 1, 70.29 cM, cytoband H1
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    345 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1858730
protein coding gene Chr1:162570196-162599086 (.)
129S1/SvImJ MGP_129S1SvImJ_G0016660
protein coding gene Chr1:167906785-167935575 (+)
A/J MGP_AJ_G0016641
protein coding gene Chr1:161071132-161099987 (+)
AKR/J MGP_AKRJ_G0016607
protein coding gene Chr1:165952993-165984150 (+)
BALB/cJ MGP_BALBcJ_G0016602
protein coding gene Chr1:161601659-161631088 (+)
C3H/HeJ MGP_C3HHeJ_G0016426
protein coding gene Chr1:166164399-166192783 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017063
protein coding gene Chr1:173563960-173594715 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014772
protein coding gene Chr1:153128104-153158653 (+)
CAST/EiJ MGP_CASTEiJ_G0016006
protein coding gene Chr1:165814041-165844004 (+)
CBA/J MGP_CBAJ_G0016401
protein coding gene Chr1:179743121-179774486 (+)
DBA/2J MGP_DBA2J_G0016507
protein coding gene Chr1:160018792-160047611 (+)
FVB/NJ MGP_FVBNJ_G0016505
protein coding gene Chr1:158445700-158474081 (+)
LP/J MGP_LPJ_G0016578
protein coding gene Chr1:169033391-169063910 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016530
protein coding gene Chr1:187258038-187287370 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017099
protein coding gene Chr1:165789142-165818454 (+)
PWK/PhJ MGP_PWKPhJ_G0015792
protein coding gene Chr1:159193636-159222762 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015579
protein coding gene Chr1:164678124-164699340 (+)
WSB/EiJ MGP_WSBEiJ_G0016068
protein coding gene Chr1:165971965-166000332 (+)



Homology
more
  • Human Ortholog
    VAMP4, vesicle associated membrane protein 4
  • Vertebrate Orthologs
    8
  • Human Ortholog
    VAMP4, vesicle associated membrane protein 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    VAMP24, VAMP-4
  • Links
    NCBI Gene ID: 8674
    neXtProt AC: NX_O75379
    UniProt: O75379

  • Chr Location
    1q24.3; chr1:171700156-171742239 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000026696 Ensembl Gene Model | MGI Sequence Detail 28570 C57BL/6J ±  kb
transcript ENSMUST00000132158 Ensembl | MGI Sequence Detail 2752 Not Applicable  
polypeptide ENSMUSP00000121977 Ensembl | MGI Sequence Detail 141 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 14
    cDNA 13
    Primer pair 1

    Microarray probesets 7
Other
Accession IDs
less
MGI:1098701
References
more
  • Summaries
    All 44
    Developmental Gene Expression 2
    Gene Ontology 12
    Phenotypes 7
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:216733 Colombo F, et al., Neurite outgrowth induced by NGF or L1CAM via activation of the TrkA receptor is sustained also by the exocytosis of enlargeosomes. Proc Natl Acad Sci U S A. 2014 Nov 25;111(47):16943-8

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory