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Copg1
Gene Detail
 Symbol
Name
ID
Copg1
coatomer protein complex, subunit gamma 1
MGI:1858696
Synonyms Copg, D6Ertd71e, D6Wsu16e
Feature Type protein coding gene
Genetic Map
Chromosome 6
39.13 cM
Detailed Genetic Map ± 1 cM


Mapping data(5)
Sequence Map
Chr6:87887814-87913595 bp, + strand
From VEGA annotation of GRCm38

  25782 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:56745  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog

Protein SuperFamily: coatomer, gamma subunit
Gene Tree: Copg1

Human
homologs
Human Homolog COPG1, coatomer protein complex, subunit gamma 1
NCBI Gene ID 22820
neXtProt AC  NX_Q9Y678
Human Synonyms  COPG
Human Chr (Location)  3q21.3; chr3:129249610-129277773 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(62) : Gene trapped(60) Targeted(2)
Incidental mutations (data from APF )
Interactions
Copg1 interacts with 212 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (15 annotations)
Process establishment of Golgi localization, intracellular protein transport, ...
Component COPI vesicle coat, cytoplasm, ...
Function structural molecule activity
External Resources: FuncBase
Expression
Literature Summary: (4 records)
Data Summary: Results (156)    Tissues (103)    Images (36)
Theiler Stages: 11, 22, 23
Assay TypeResults
RNA in situ 150
RT-PCR 6
cDNA source data(334)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(339) cDNA(336) Primer pair(3)
Microarray probesets(7)
Other database
links
VEGA Gene ModelOTTMUSG00000022960 (Evidence)
Ensembl Gene ModelENSMUSG00000030058 (Evidence)
Entrez Gene54161 (Evidence)
UniGene258785
DFCITC1573862, TC1585718, TC1603379, TC1618845
DoTSDT.101404495, DT.536668, DT.91432619, DT.94375052, DT.97370544
NIA Mouse Gene IndexU007139
Consensus CDS ProjectCCDS39549.1, CCDS39550.1
International Mouse Knockout Project StatusCopg1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000022960 VEGA Gene Model | MGI Sequence Detail 25782 C57BL/6J ±  kb
transcript OTTMUST00000055237 VEGA | MGI Sequence Detail 4140 Not Applicable 
polypeptide OTTMUSP00000026425 VEGA | MGI Sequence Detail 874 Not Applicable 

For the selected sequences
All sequences(90) RefSeq(6) UniProt(2)
Polymorphisms SNPs within 2kb(78 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR011989 Armadillo-like helical
InterPro IPR016024 Armadillo-type fold
InterPro IPR015873 Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain
InterPro IPR002553 Clathrin/coatomer adaptor, adaptin-like, N-terminal
InterPro IPR009028 Coatomer/calthrin adaptor appendage, C-terminal subdomain
InterPro IPR013041 Coatomer/clathrin adaptor appendage, Ig-like subdomain
InterPro IPR017106 Coatomer gamma subunit
InterPro IPR013040 Coatomer, gamma subunit, appendage, Ig-like subdomain
Protein Ontology PR:000005737 coatomer subunit gamma
References (Earliest) J:50869 Ko MSH, et al., Genome-wide mapping of unselected transcripts from extraembryonic tissue of 7.5-day mouse embryos reveals enrichment in the t-complex and under-representation on the X chromosome. Hum Mol Genet. 1998 Nov;7(12):1967-78
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(45)
Other
accession IDs
MGD-MRK-34156, MGI:106462, MGI:1098809, MGI:2141561, MGI:3036293

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/23/2014
MGI 5.19
The Jackson Laboratory