About   Help   FAQ
Scarf2
Gene Detail
 Symbol
Name
ID
Scarf2
scavenger receptor class F, member 2
MGI:1858430
Synonyms Srec2, SREC-II
Feature Type protein coding gene
Genetic Map
Chromosome 16
11.03 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr16:17797282-17808287 bp, + strand
From NCBI annotation of GRCm38

  11006 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:17817  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Scarf2

Human
homologs
Human Homolog SCARF2, scavenger receptor class F, member 2
NCBI Gene ID 91179
neXtProt AC  NX_Q96GP6
Human Synonyms  NSR1, SREC2, SREC-II, SRECRP-1, VDEGS
Human Chr (Location)  22q11.21; chr22:20424584-20437859 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human SCARF2
Alleles
and
phenotypes
All alleles(2) : Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Process cell adhesion, heterophilic cell-cell adhesion, ...
Component integral component of membrane, membrane
Function scavenger receptor activity
External Resources: FuncBase
Expression
cDNA source data(65)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(67) Genomic(2) cDNA(65)
Microarray probesets(7)
Other database
links
Ensembl Gene ModelENSMUSG00000012017 (Evidence)
Entrez Gene224024 (Evidence)
UniGene194950
DFCITC1578704, TC1597241, TC1702287, TC1713375
DoTSDT.101202820, DT.40182094, DT.521716, DT.532755, DT.87059357, DT.94258894
Consensus CDS ProjectCCDS28010.1
International Mouse Knockout Project StatusScarf2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 224024 NCBI Gene Model | MGI Sequence Detail 11006 C57BL/6J ±  kb
transcript NM_153790 RefSeq | MGI Sequence Detail 3309 C57BL/6 
polypeptide P59222 UniProt | EBI | MGI Sequence Detail 833 Not Applicable 

For the selected sequences
All sequences(43) RefSeq(8) UniProt(2)
Polymorphisms SNPs within 2kb(2 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR013032 EGF-like, conserved site
InterPro IPR000742 Epidermal growth factor-like domain
InterPro IPR009030 Insulin-like growth factor binding protein, N-terminal
Protein Ontology PR:000014496 scavenger receptor class F member 2
Graphical View of Protein Domain Structure
References (Earliest) J:60871 Lund J, et al., Comparative sequence analysis of 634 kb of the mouse chromosome 16 region of conserved synteny with the human velocardiofacial syndrome region on chromosome 22q11.2. Genomics. 2000 Feb 1;63(3):374-83
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(27)
Other
accession IDs
MGI:1858437, MGI:1858438, MGI:2146384

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
07/15/2014
MGI 5.18
The Jackson Laboratory