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Scarf2
Gene Detail
Symbol

Name
ID
Scarf2
scavenger receptor class F, member 2
MGI:1858430
Synonyms
Srec2, SREC-II
Feature Type
protein coding gene
Genetic Map
Chromosome 16
11.03 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr16:17797282-17808287 bp, + strand
From Ensembl annotation of GRCm38

  11006 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:17817  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: SCARF2
Gene Tree: Scarf2

Human
homologs
SCARF2, scavenger receptor class F, member 2
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 91179
neXtProt AC: NX_Q96GP6

Human Synonyms: NSR1, SREC2, SREC-II, SRECRP-1, VDEGS

Human Chr (Location): 22q11.21; chr22:20424584-20437859 (-)  GRCh38.p2

Disease Associations: (1) Diseases Associated with Human SCARF2

Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Scarf2 interacts with 77 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
Expression
cDNA source data(65)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase scarf2    NEW 
Molecular
reagents
All nucleic(67) Genomic(2) cDNA(65)
Microarray probesets(7)
Other database
links
Ensembl Gene Model ENSMUSG00000012017 (Evidence)
Entrez Gene 224024 (Evidence)
UniGene 194950
DFCI TC1578704, TC1597241, TC1702287, TC1713375
DoTS DT.101202820, DT.40182094, DT.521716, DT.532755, DT.87059357, DT.94258894
Consensus CDS Project CCDS28010.1
International Mouse Phenotyping Consortium Status Scarf2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000012017 Ensembl Gene Model | MGI Sequence Detail 11006 C57BL/6J ±  kb
transcript ENSMUST00000012161 Ensembl | MGI Sequence Detail 3302 Not Applicable 
polypeptide ENSMUSP00000012161 Ensembl | MGI Sequence Detail 833 Not Applicable 

For the selected sequences
All sequences(43) RefSeq(8) UniProt(2)
Polymorphisms
SNPs within 2kb(2 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR013032 EGF-like, conserved site
InterPro IPR000742 EGF-like domain
InterPro IPR009030 Insulin-like growth factor binding protein, N-terminal
Protein Ontology PR:000014496 scavenger receptor class F member 2
References
(Earliest) J:60871 Lund J, et al., Comparative sequence analysis of 634 kb of the mouse chromosome 16 region of conserved synteny with the human velocardiofacial syndrome region on chromosome 22q11.2. Genomics. 2000 Feb 1;63(3):374-83
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(27)
Other
accession IDs
MGI:1858437, MGI:1858438, MGI:2146384

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory