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Scarf2 Gene Detail
Summary
  • Symbol
    Scarf2
  • Name
    scavenger receptor class F, member 2
  • Synonyms
    Srec2, SREC-II
  • Feature Type
    protein coding gene
  • IDs
    MGI:1858430
    NCBI Gene: 224024
  • Alliance
Location & Maps
more
  • Sequence Map
    Chr16:17797282-17808287 bp, + strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      11006 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 11.03 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    SCARF2, scavenger receptor class F member 2
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SCARF2, scavenger receptor class F member 2
    Orthology source: HomoloGene, HGNC
  • Synonyms
    NSR1, SREC2, SREC-II, SRECRP-1, VDEGS
  • Links
    NCBI Gene ID: 91179
    neXtProt AC: NX_Q96GP6
    UniProt: Q96GP6

  • Chr Location
    22q11.21; chr22:20424584-20437859 (-)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 17817
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SCARF2
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    6 phenotypes from 1 allele in 1 genetic background
    5 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000012017 Ensembl Gene Model | MGI Sequence Detail 11006 C57BL/6J ±  kb
    transcript ENSMUST00000012161 Ensembl | MGI Sequence Detail 3302 Not Applicable  
    polypeptide ENSMUSP00000012161 Ensembl | MGI Sequence Detail 833 Not Applicable  
    For the selected sequence
    Polymorphisms
    less
    • SNPs within 2kb
      2 from dbSNP Build 142
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • InterPro Domains
      IPR013032 EGF-like, conserved site
      IPR000742 EGF-like domain
      IPR009030 Growth factor receptor cysteine-rich domain superfamily
      IPR002049 Laminin EGF domain
      IPR033327 Scavenger receptor class F member 2
    Molecular
    Reagents
    less
    • All nucleic 67
      Genomic 2
      cDNA 65

      Microarray probesets 7
    Other
    Accession IDs
    less
    MGI:1858437, MGI:1858438, MGI:2146384
    References
    more
    • Summaries
      All 27
      Developmental Gene Expression 2
      Gene Ontology 2
      Phenotypes 5
    • Earliest
      J:60871 Lund J, et al., Comparative sequence analysis of 634 kb of the mouse chromosome 16 region of conserved synteny with the human velocardiofacial syndrome region on chromosome 22q11.2. Genomics. 2000 Feb 1;63(3):374-83
    • Latest
      J:236599 Dickinson ME, et al., High-throughput discovery of novel developmental phenotypes. Nature. 2016 Sep 14;537(7621):508-514

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    06/12/2018
    MGI 6.12
    The Jackson Laboratory