Scarf2
Gene Detail

Symbol Name ID

Scarf2 scavenger receptor class F, member 2 MGI:1858430

Synonyms

Srec2, SREC-II

Feature Type

protein coding gene

Genetic Map

Chromosome 16

11.03 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr16:17797282-17808287 bp, + strand From NCBI annotation of GRCm38   11006 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:17817  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Scarf2

Human homologs

Human Homolog		SCARF2, scavenger receptor class F, member 2
NCBI Gene ID		91179
neXtProt AC		NX_Q96GP6
Human Synonyms		NSR1, SREC2, SREC-II, SRECRP-1, VDEGS
Human Chr (Location)		22q11.21; chr22:20778874-20792146 (-)  GRCh37.p10
Disease Associations		(1) Diseases Associated with Human SCARF2

Alleles and phenotypes

All alleles(1) : Targeted(1)

Gene Ontology (GO) classifications

All GO classifications: (5 annotations)

Process	cell adhesion, heterophilic cell-cell adhesion
Component	integral to membrane, membrane
Function	scavenger receptor activity

External Resources: FuncBase

Expression

cDNA source data(65)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(67) Genomic(2) cDNA(65)
Microarray probesets(7)

Other database links

Ensembl Gene Model	ENSMUSG00000012017 (Evidence)
Entrez Gene	224024 (Evidence)
UniGene	194950
DFCI	TC1578704, TC1597241, TC1702287, TC1713375
DoTS	DT.101202820, DT.40182094, DT.521716, DT.532755, DT.87059357, DT.94258894
Consensus CDS Project	CCDS28010.1
International Mouse Knockout Project Status	Scarf2

Sequences

Length	Strain/Species
genomic	224024	NCBI Gene Model | MGI Sequence Detail	11006	C57BL/6J
transcript	NM_153790	RefSeq | MGI Sequence Detail	3309	C57BL/6
polypeptide	P59222	UniProt | EBI | MGI Sequence Detail	833	Not Applicable

All sequences(37) RefSeq(2) UniProt(2)

Protein-related information

Resource	ID	Description
InterPro	IPR013032	EGF-like, conserved site
InterPro	IPR000742	Epidermal growth factor-like domain
InterPro	IPR009030	Insulin-like growth factor binding protein, N-terminal
Protein Ontology	PR:000014496	scavenger receptor class F member 2

Graphical View of Protein Domain Structure

References

(Earliest) J:60871 Lund J, et al., Comparative sequence analysis of 634 kb of the mouse chromosome 16 region of conserved synteny with the human velocardiofacial syndrome region on chromosome 22q11.2. Genomics. 2000 Feb 1;63(3):374-83
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(25)

Other accession IDs

MGI:1858437, MGI:1858438, MGI:2146384