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Srrm1 Gene Detail
Summary
  • Symbol
    Srrm1
  • Name
    serine/arginine repetitive matrix 1
  • Synonyms
    SRm160
  • Feature Type
    protein coding gene
  • IDs
    MGI:1858303
    NCBI Gene: 51796
  • Gene Overview
    MyGene.info: SRRM1
Location & Maps
more
  • Sequence Map
    Chr4:135320484-135353321 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      32838 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 67.34 cM, cytoband D3
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    SRRM1, serine and arginine repetitive matrix 1
  • Human Ortholog
    SRRM1, serine and arginine repetitive matrix 1
    Orthology source: HGNC
  • Synonyms
    160-KD, POP101, SRM160
  • Links
    NCBI Gene ID: 10250
    neXtProt AC: NX_Q8IYB3

  • Chr Location
    1p36.11; chr1:24643012-24673281 (+)  GRCh38.p2

  • HCOP
    human homology predictions: SRRM1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
  • All Mutations and Alleles
    45
  • Chemically induced (other)
    2
  • Gene trapped
    40
  • Targeted
    3
  • Genomic Mutations
    3 involving Srrm1
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000009683 VEGA Gene Model | MGI Sequence Detail 32838 C57BL/6J ±  kb
transcript OTTMUST00000087150 VEGA | MGI Sequence Detail 3152 Not Applicable  
polypeptide OTTMUSP00000047271 VEGA | MGI Sequence Detail 923 Not Applicable  
For the selected sequence
Polymorphisms
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  • SNPs within 2kb
    264 from dbSNP Build 142
Protein
Information
less
  • UniProt
    9 Sequences
  • Protein Ontology
    PR:000015638 serine/arginine repetitive matrix protein 1
  • InterPro Domains
    IPR002483 PWI domain
Molecular
Reagents
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  • All nucleic 244
    cDNA 243
    Primer pair 1

    Microarray probesets 9
Other
Accession IDs
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MGI:2140123
References
more
  • Summaries
    All 38
    Developmental Gene Expression 6
    Gene Ontology 4
    Phenotypes 11
  • Earliest
    J:70954 Blencowe BJ, et al., A coactivator of pre-mRNA splicing. Genes Dev. 1998 Apr 1;12(7):996-1009
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/23/2016
MGI 6.05
The Jackson Laboratory