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Snrpa
Gene Detail
 Symbol
Name
ID
Snrpa
small nuclear ribonucleoprotein polypeptide A
MGI:1855690
Synonyms C430021M15Rik, Rnu1a1, U1A, U1 snRNP
Feature Type protein coding gene
Genetic Map
Chromosome 7
15.84 cM, cytoband A3
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr7:27187005-27196271 bp, - strand
From VEGA annotation of GRCm38

  9267 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:133537  Vertebrate Homology Class
3 mouse

Protein SuperFamily: U1 small nuclear ribonucleoprotein
Gene Tree: Snrpa

Mutations,
alleles, and
phenotypes
All mutations/alleles(28) : Gene trapped(25) Targeted(3)
Interactions
Snrpa interacts with 62 markers (Mir20a, Mir27a, Mir30b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process mRNA processing, mRNA splicing, via spliceosome, ...
Component nucleus, ribonucleoprotein complex, ...
Function nucleic acid binding, nucleotide binding, ...
External Resources: FuncBase
Expression
Literature Summary: (4 records)
Data Summary: Results (22)    Tissues (22)    Images (3)
Theiler Stages: 21, 28
Assay TypeResults
RNA in situ 20
RT-PCR 2
cDNA source data(130)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(132) cDNA(131) Primer pair(1)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000031830 (Evidence)
Ensembl Gene ModelENSMUSG00000061479 (Evidence)
Entrez Gene53607 (Evidence)
UniGene386890
DFCITC1576187, TC1601148
Consensus CDS ProjectCCDS21014.1
International Mouse Knockout Project StatusSnrpa
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000031830 VEGA Gene Model | MGI Sequence Detail 9267 C57BL/6J ±  kb
transcript OTTMUST00000078920 VEGA | MGI Sequence Detail 1336 Not Applicable 
polypeptide OTTMUSP00000042024 VEGA | MGI Sequence Detail 287 Not Applicable 

For the selected sequences
All sequences(51) RefSeq(6) UniProt(4)
Polymorphisms SNPs within 2kb(15 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR012677 Nucleotide-binding, alpha-beta plait
InterPro IPR000504 RNA recognition motif domain
InterPro IPR024888 U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B''
Protein Ontology PR:000015339 U1 small nuclear ribonucleoprotein A
References (Earliest) J:15179 Bennett MM, et al., Nucleotide sequence analysis of the A protein of the U1 small nuclear ribonucleoprotein particle: the murine protein contains a 5' amino-terminal tag. Nucleic Acids Res. 1993 Sep 11;21(18):4404
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)
Other
accession IDs
MGI:2441904

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory