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Hpcal1 Gene Detail
Summary
  • Symbol
    Hpcal1
  • Name
    hippocalcin-like 1
  • Synonyms
    neural visinin-like 3, Nvp3, VILIP3, visinin like 3, Vnsl3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1855689
    NCBI Gene: 53602
  • Gene Overview
    MyGene.info: HPCAL1
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr12:17690856-17791933 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, 8.13 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1352 from dbSNP Build 142
  • Strain Annotations
    8
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1855689
protein coding gene Chr12:17690750-17791944 (.)
129S1/SvImJ no annotation
A/J no annotation
AKR/J MGP_AKRJ_G0019558
protein coding gene Chr12:15289866-15403816 (+)
BALB/cJ MGP_BALBcJ_G0019564
protein coding gene Chr12:14847341-14952354 (+)
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0019340
protein coding gene Chr12:16633130-16639855 (+)
DBA/2J MGP_DBA2J_G0019453
protein coding gene Chr12:14540022-14648073 (+)
FVB/NJ MGP_FVBNJ_G0019444
protein coding gene Chr12:14411406-14500534 (+)
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0019479
protein coding gene Chr12:16391954-16495990 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0020051
protein coding gene Chr12:14999308-15098316 (+)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    HPCAL1, hippocalcin like 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    HPCAL1, hippocalcin like 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    BDR1, HLP2, VILIP-3
  • Links
    NCBI Gene ID: 3241
    neXtProt AC: NX_P37235
    UniProt: P37235

  • Chr Location
    2p25.1; chr2:10302124-10427617 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 37586
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: HPCAL1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000071379 Ensembl Gene Model | MGI Sequence Detail 101078 C57BL/6J ±  kb
transcript ENSMUST00000071858 Ensembl | MGI Sequence Detail 1526 Not Applicable  
polypeptide ENSMUSP00000071756 Ensembl | MGI Sequence Detail 193 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 3
References
more
  • Summaries
    All 32
    Developmental Gene Expression 3
    Gene Ontology 3
    Phenotypes 5
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/13/2018
MGI 6.13
The Jackson Laboratory