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Capn15 Gene Detail
Summary
  • Symbol
    Capn15
  • Name
    calpain 15
  • Synonyms
    Solh
  • Feature Type
    protein coding gene
  • IDs
    MGI:1355075
    NCBI Gene: 50817
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:25958364-25985796 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 17, 13.04 cM, cytoband A3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    244 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1355075
protein coding gene Chr17:25958364-25985874 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023386
protein coding gene Chr17:25075852-25103219 (-)
A/J MGP_AJ_G0023345
protein coding gene Chr17:24333565-24360861 (-)
AKR/J MGP_AKRJ_G0023311
protein coding gene Chr17:24447717-24476645 (-)
BALB/cJ MGP_BALBcJ_G0023350
protein coding gene Chr17:24564082-24593076 (-)
C3H/HeJ MGP_C3HHeJ_G0023110
protein coding gene Chr17:24828602-24856875 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023792
protein coding gene Chr17:26128674-26156088 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021268
protein coding gene Chr17:21796532-21823155 (-)
CAST/EiJ MGP_CASTEiJ_G0022612
protein coding gene Chr17:24722928-24750876 (-)
CBA/J MGP_CBAJ_G0023085
protein coding gene Chr17:27057493-27086552 (-)
DBA/2J MGP_DBA2J_G0023215
protein coding gene Chr17:23934299-23961956 (-)
FVB/NJ MGP_FVBNJ_G0023185
protein coding gene Chr17:23689784-23717316 (-)
LP/J MGP_LPJ_G0023292
protein coding gene Chr17:25361517-25393221 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023204
protein coding gene Chr17:26640983-26670120 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023832
protein coding gene Chr17:24768093-24799448 (-)
PWK/PhJ MGP_PWKPhJ_G0022361
protein coding gene Chr17:22710401-22737901 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022179
protein coding gene Chr17:22847225-22878932 (-)
WSB/EiJ MGP_WSBEiJ_G0022675
protein coding gene Chr17:24817975-24846943 (-)



Homology
more
  • Human Ortholog
    CAPN15, calpain 15
  • Vertebrate Orthologs
    10
  • Human Ortholog
    CAPN15, calpain 15
    Orthology source: HomoloGene, HGNC
  • Synonyms
    SOLH
  • Links
    NCBI Gene ID: 6650
    neXtProt AC: NX_O75808
    UniProt: O75808

  • Chr Location
    16p13.3; chr16:527795-554636 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 45782
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: CAPN15
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000037326 Ensembl Gene Model | MGI Sequence Detail 27433 C57BL/6J ±  kb
transcript ENSMUST00000212520 Ensembl | MGI Sequence Detail 5216 Not Applicable  
polypeptide ENSMUSP00000148486 Ensembl | MGI Sequence Detail 1196 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 21
    Genomic 2
    cDNA 19

    Microarray probesets 5
References
more
  • Summaries
    All 31
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 8
  • Earliest
    J:61079 Kamei M, et al., Solh, the mouse homologue of the Drosophila melanogaster small optic lobes gene: organization, chromosomal mapping, and localization of gene product to the olfactory bulb. Genomics. 2000 Feb 15;64(1):82-9
  • Latest
    J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/31/2020
MGI 6.15
The Jackson Laboratory