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Sall2
Gene Detail
 Symbol
Name
ID
Sall2
sal-like 2 (Drosophila)
MGI:1354373
Synonyms mKIAA0360, Msal-2
Feature Type protein coding gene
Genetic Map
Chromosome 14
26.89 cM, cytoband B-C1
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr14:52311172-52328762 bp, - strand
From VEGA annotation of GRCm38

  17591 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9269  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque

Gene Tree: Sall2

Human
homologs
Human Homolog SALL2, spalt-like transcription factor 2
NCBI Gene ID 6297
neXtProt AC  NX_Q9Y467
Human Synonyms  HSAL2, p150(Sal2), Sal-2, ZNF795
Human Chr (Location)  14q11.1-q12; chr14:21521080-21537203 (-)  GRCh38
Alleles
and
phenotypes
All alleles(9) : Gene trapped(4) Targeted(5)
Incidental mutations (data from Mutagenetix , APF )
 
Homozygous mutation of this gene results in no apparent abnormal phenotypes.
 
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Process negative regulation of transcription, DNA-templated, negative regulation of transcription from RNA polymerase II promoter, ...
Component nucleus, NuRD complex
Function DNA binding, metal ion binding, ...
External Resources: FuncBase
Expression
Literature Summary: (12 records)
Data Summary: Results (140)    Tissues (99)    Images (24)
Theiler Stages: 13, 15, 17, 19, 20, 21, 22, 23, 24, 25, 26, 28
Assay TypeResults
RNA in situ 111
Northern blot 9
RT-PCR 20
cDNA source data(12)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(17) Genomic(2) cDNA(13) Primer pair(2)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000023347 (Evidence)
Ensembl Gene ModelENSMUSG00000049532 (Evidence)
Entrez Gene50524 (Evidence)
DFCITC1574984, TC1657009
DoTSDT.101736779, DT.40183898, DT.94355340
NIA Mouse Gene IndexU035541
Consensus CDS ProjectCCDS27054.1
International Mouse Knockout Project StatusSall2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023347 VEGA Gene Model | MGI Sequence Detail 17591 C57BL/6J ±  kb
transcript OTTMUST00000056615 VEGA | MGI Sequence Detail 4773 Not Applicable 
polypeptide OTTMUSP00000027231 VEGA | MGI Sequence Detail 1074 Not Applicable 

For the selected sequences
All sequences(38) RefSeq(4) UniProt(4)
Polymorphisms SNPs within 2kb(139 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007087 Zinc finger, C2H2
InterPro IPR015880 Zinc finger, C2H2-like
InterPro IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Protein Ontology PR:000014437 Sal-like protein 2
References (Earliest) J:59254 Kohlhase J, et al., Genomic cloning, chromosomal mapping, and expression analysis of msal-2. Mamm Genome. 2000 Jan;11(1):64-8
(Latest) J:209154 Kelberman D, et al., Mutation of SALL2 causes recessive ocular coloboma in humans and mice. Hum Mol Genet. 2014 May 15;23(10):2511-26
All references(46)
Other
accession IDs
MGI:2145603, MGI:2145841

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory