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Sall2
Gene Detail
Symbol

Name
ID
Sall2
sal-like 2 (Drosophila)
MGI:1354373
Synonyms
mKIAA0360, Msal-2
Feature Type
protein coding gene
Genetic Map
Chromosome 14
26.89 cM, cytoband B-C1
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr14:52311172-52328762 bp, - strand
From VEGA annotation of GRCm38

  17591 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:9269  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 western clawed frog

Gene Tree: Sall2

Human
homologs
Human Homolog SALL2, spalt-like transcription factor 2
NCBI Gene ID 6297
neXtProt AC  NX_Q9Y467
Human Synonyms  COLB, HSAL2, p150(Sal2), Sal-2, ZNF795
Human Chr (Location)  14q11.1-q12; chr14:21521080-21537203 (-)  GRCh38
Disease Associations  (1) Diseases Associated with Human SALL2
Mutations,
alleles, and
phenotypes
All mutations/alleles(9) : Gene trapped(4) Targeted(5)
Incidental mutations (data from Mutagenetix , APF )
 
Homozygous mutation of this gene results in no apparent abnormal phenotypes.
 
Interactions
Sall2 interacts with 220 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (12 records)
Data Summary: Results (140)    Tissues (108)    Images (24)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 111
Northern blot 9
RT-PCR 20
cDNA source data(12)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(17) Genomic(2) cDNA(13) Primer pair(2)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000023347 (Evidence)
Ensembl Gene ModelENSMUSG00000049532 (Evidence)
Entrez Gene50524 (Evidence)
DFCITC1657009, TC1574984
DoTSDT.40183898, DT.101736779, DT.94355340
NIA Mouse Gene IndexU035541
Consensus CDS ProjectCCDS27054.1
International Mouse Knockout Project StatusSall2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023347 VEGA Gene Model | MGI Sequence Detail 17591 C57BL/6J ±  kb
transcript OTTMUST00000056615 VEGA | MGI Sequence Detail 4773 Not Applicable 
polypeptide OTTMUSP00000027231 VEGA | MGI Sequence Detail 1074 Not Applicable 

For the selected sequences
All sequences(41) RefSeq(4) UniProt(7)
Polymorphisms
SNPs within 2kb(139 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007087 Zinc finger, C2H2
InterPro IPR015880 Zinc finger, C2H2-like
InterPro IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Protein Ontology PR:000014437 Sal-like protein 2
References
(Earliest) J:59254 Kohlhase J, et al., Genomic cloning, chromosomal mapping, and expression analysis of msal-2. Mamm Genome. 2000 Jan;11(1):64-8
(Latest) J:209154 Kelberman D, et al., Mutation of SALL2 causes recessive ocular coloboma in humans and mice. Hum Mol Genet. 2014 May 15;23(10):2511-26
All references(46)
Other
accession IDs
MGI:2145603, MGI:2145841

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
11/18/2014
MGI 5.20
The Jackson Laboratory