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Abt1 Gene Detail
Summary
  • Symbol
    Abt1
  • Name
    activator of basal transcription 1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1353636
    NCBI Gene: 30946
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:23418361-23423866 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 9.65 cM, cytoband A3.2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    75 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1353636
protein coding gene Chr13:23418361-23423866 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020341
protein coding gene Chr13:20827238-20829561 (-)
A/J MGP_AJ_G0020298
protein coding gene Chr13:20457425-20459748 (-)
AKR/J MGP_AKRJ_G0020270
protein coding gene Chr13:20688065-20690388 (-)
BALB/cJ MGP_BALBcJ_G0020284
protein coding gene Chr13:20448644-20450967 (-)
C3H/HeJ MGP_C3HHeJ_G0020093
protein coding gene Chr13:20776791-20779114 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020729
protein coding gene Chr13:21587628-21589955 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018313
protein coding gene Chr13:19258840-19261156 (-)
CAST/EiJ MGP_CASTEiJ_G0019614
protein coding gene Chr13:20463442-20465765 (-)
CBA/J MGP_CBAJ_G0020044
protein coding gene Chr13:22420294-22422617 (-)
DBA/2J MGP_DBA2J_G0020170
protein coding gene Chr13:20027179-20029502 (-)
FVB/NJ MGP_FVBNJ_G0020158
protein coding gene Chr13:19647008-19649331 (-)
LP/J MGP_LPJ_G0020243
protein coding gene Chr13:21149845-21152167 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020188
protein coding gene Chr13:22742159-22744481 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020759
protein coding gene Chr13:20550750-20553073 (-)
PWK/PhJ MGP_PWKPhJ_G0019370
protein coding gene Chr13:20014609-20016979 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019181
protein coding gene Chr13:19346476-19348802 (-)
WSB/EiJ MGP_WSBEiJ_G0019671
protein coding gene Chr13:20677077-20679400 (-)



Homology
more
  • Human Ortholog
    ABT1, activator of basal transcription 1
  • Vertebrate Orthologs
    8
  • Human Ortholog
    ABT1, activator of basal transcription 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    Esf2, hABT1
  • Links
    NCBI Gene ID: 29777
    neXtProt AC: NX_Q9ULW3
    UniProt: Q9ULW3

  • Chr Location
    6p22.2; chr6:26596943-26600050 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 30946 NCBI Gene Model | MGI Sequence Detail 5506 C57BL/6J ±  kb
transcript NM_013924 RefSeq | MGI Sequence Detail 4456 C57BL/6  
polypeptide Q9QYL7 UniProt | EBI | MGI Sequence Detail 269 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 63
    cDNA 62
    Primer pair 1

    Microarray probesets 3
References
more
  • Summaries
    All 45
    Developmental Gene Expression 7
    Gene Ontology 6
    Phenotypes 13
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:215487 Thompson CL, et al., A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain. Neuron. 2014 Jul 16;83(2):309-23

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory