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Slc39a1 Gene Detail
Summary
  • Symbol
    Slc39a1
  • Name
    solute carrier family 39 (zinc transporter), member 1
  • Synonyms
    zip1, Zirtl
  • Feature Type
    protein coding gene
  • IDs
    MGI:1353474
    NCBI Gene: 30791
  • Gene Overview
    MyGene.info: SLC39A1
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:90248192-90253613 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 39.21 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    2 from dbSNP Build 142
  • Strain Annotations
    8
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1353474
 protein coding gene Chr3:90248172-90253613 (.)
129S1/SvImJ no annotation
A/J no annotation
AKR/J MGP_AKRJ_G0027387
 protein coding gene Chr3:89680703-89685611 (+)
BALB/cJ MGP_BALBcJ_G0025529
 protein coding gene Chr2:27361935-27371227 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0025974
 protein coding gene Chr2:29301450-29309189 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025230
 protein coding gene Chr3:83028983-83034077 (+)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0027148
 protein coding gene Chr3:97186651-97191870 (+)
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ MGP_NODShiLtJ_G0027274
 protein coding gene Chr3:103383272-103391659 (+)
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0026173
 protein coding gene Chr3:88606740-88611349 (+)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    SLC39A1, solute carrier family 39 member 1
  • Vertebrate Orthologs
    8
  • Human Ortholog
    SLC39A1, solute carrier family 39 member 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    ZIP1, ZIRTL
  • Links
    NCBI Gene ID: 27173
    neXtProt AC: NX_Q9NY26
    UniProt: Q9NY26

  • Chr Location
    1q21.3; chr1:153959099-153968184 (-)  GRCh38.p7
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    5 phenotypes from 2 alleles in 2 genetic backgrounds
    5 phenotypes from multigenic genotypes
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    18
  • Chemically induced (other)
    1
  • Gene trapped
    13
  • Radiation induced
    1
  • Targeted
    3
  • Genomic Mutations
    2 involving Slc39a1
  • Find Mice (IMSR)
    13 strains or lines available
On a zinc-adequate diet, homozygous null mutant mice exhibit normal fertility and normal embryonic and postnatal development. E14 embryos of dams fed a zinc-deficient diet from day E8 have <3.3-fold the incidence of abnormalities seen in wild-type embryos of zinc-deprived wild-type mothers.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    24
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    329
  • Tissues
    133
  • cDNA Data
    40
  • Literature Summary
    8
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 30791 NCBI Gene Model | MGI Sequence Detail 5422 C57BL/6J ±  kb
transcript NM_013901 RefSeq | MGI Sequence Detail 2344 Not Specified  
polypeptide Q9QZ03 UniProt | EBI | MGI Sequence Detail 324 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 46
    Genomic 1
    cDNA 41
    Primer pair 3
    Other 1

    Microarray probesets 4
References
more
  • Summaries
    All 45
    Developmental Gene Expression 8
    Diseases 1
    Gene Ontology 8
    Phenotypes 11
  • Earliest
    J:39118 Crozet F, et al., Cloning of the genes encoding two murine and human cochlear unconventional type I myosins. Genomics. 1997 Mar 1;40(2):332-41
  • Latest
    J:239473 Bhutia YD, et al., SLC transporters as a novel class of tumour suppressors: identity, function and molecular mechanisms. Biochem J. 2016 May 01;473(9):1113-24
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/06/2018
MGI 6.13 		The Jackson Laboratory