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Pdlim4 Gene Detail
Summary
  • Symbol
    Pdlim4
  • Name
    PDZ and LIM domain 4
  • Synonyms
    Ril
  • Feature Type
    protein coding gene
  • IDs
    MGI:1353470
    NCBI Gene: 30794
  • Gene Overview
    MyGene.info: PDLIM4
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:54054928-54069014 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 32.13 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    110 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1353470
protein coding gene Chr11:54054928-54069032 (-)
129S1/SvImJ MGP_129S1SvImJ_G0018310
protein coding gene Chr11:53514663-53528738 (-)
A/J MGP_AJ_G0018279
protein coding gene Chr11:51513997-51528061 (-)
AKR/J MGP_AKRJ_G0018248
protein coding gene Chr11:53202651-53216705 (-)
BALB/cJ MGP_BALBcJ_G0018250
protein coding gene Chr11:51852834-51866893 (-)
C3H/HeJ MGP_C3HHeJ_G0018061
protein coding gene Chr11:53143300-53157361 (-)
C57BL/6NJ MGP_C57BL6NJ_G0018702
protein coding gene Chr11:55162951-55176998 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016352
protein coding gene Chr11:48982508-48996706 (-)
CAST/EiJ MGP_CASTEiJ_G0017626
protein coding gene Chr11:53188872-53202885 (-)
CBA/J MGP_CBAJ_G0018036
protein coding gene Chr11:57777754-57791819 (-)
DBA/2J MGP_DBA2J_G0018145
protein coding gene Chr11:51233043-51247185 (-)
FVB/NJ MGP_FVBNJ_G0018137
protein coding gene Chr11:50874029-50890293 (-)
LP/J MGP_LPJ_G0018220
protein coding gene Chr11:53964190-53978256 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0018163
protein coding gene Chr11:59004589-59018664 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0018744
protein coding gene Chr11:53214042-53228143 (-)
PWK/PhJ MGP_PWKPhJ_G0017399
protein coding gene Chr11:51770010-51784136 (-)
SPRET/EiJ MGP_SPRETEiJ_G0017194
protein coding gene Chr11:52984268-52998253 (-)
WSB/EiJ MGP_WSBEiJ_G0017674
protein coding gene Chr11:52856301-52870446 (-)



Homology
more
  • Human Ortholog
    PDLIM4, PDZ and LIM domain 4
  • Vertebrate Orthologs
    10
  • Human Ortholog
    PDLIM4, PDZ and LIM domain 4
    Orthology source: HGNC, HomoloGene
  • Synonyms
    RIL
  • Links
    NCBI Gene ID: 8572
    neXtProt AC: NX_P50479
    UniProt: P50479

  • Chr Location
    5q31.1; chr5:132257658-132273454 (+)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with human PDLIM4 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000020388 Ensembl Gene Model | MGI Sequence Detail 14087 C57BL/6J ±  kb
transcript ENSMUST00000018755 Ensembl | MGI Sequence Detail 1182 Not Applicable  
polypeptide ENSMUSP00000018755 Ensembl | MGI Sequence Detail 330 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 43
    Genomic 2
    cDNA 41

    Microarray probesets 4
References
more
  • Summaries
    All 40
    Developmental Gene Expression 12
    Gene Ontology 5
    Phenotypes 6
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:209112 Shimizu H, et al., The AERO system: a 3D-like approach for recording gene expression patterns in the whole mouse embryo. PLoS One. 2013;8(10):e75754

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/04/2018
MGI 6.13
The Jackson Laboratory